FC868583

Overview
NameFC868583
Unique NameFC868583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868583_ssr22 microsatellite FC868583_ssr22:22..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9361 contig Ccv1_Contig9361:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RB32D_DICDI (Ras-related protein Rab-32D OS=Dictyostelium discoideum GN=rab32D PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.664e-21
Identity = 54/165 (32.73%), Postives = 94/165 (56.97%), Query Frame = 2
Query:  194 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNK---------LLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAM 661
            KL+LIGD  VGK+ +L R     + + Y STIG DF  +T  Q+     +Q+WDTAGQE++  +TS+++R +  +I+V+D++++ SF N+  W  +   + S+++N          LL+ NK D   + V   E  +   D     + E SAK S+N++++ + +
Sbjct:   11 KLILIGDVNVGKTSILHRLIFSKFTEEYKSTIGADFLSKTFYQNDIITHIQLWDTAGQEKYWCLTSAFWRTSDAVILVFDISNESSFRNLNFWYKQ---FKSKSINPDGTEKQLPILLLANKSDSLTRAVDQSEINQWCTDHKVNLYYEVSAKSSINIKESILKL 172          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.664e-21
Identity = 54/163 (33.13%), Postives = 89/163 (54.60%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLV-GNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 676
            +KL+++G  GVGKS L ++F    ++D Y  TI   ++ + V  D +   L + DTAGQE +  +   Y R   G ++VY +T + SF  +  +  +I R   ++   ++V  NKCDL  ++ V     +  A   G  F+ETSAK  +NV+QAF  +  +I+
Sbjct:   11 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCVIDD-EVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKDQDTFPVVVVANKCDLEYERQVGMNEGRDLARHFGCKFVETSAKVRINVDQAFQDLVREIR 172          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.664e-21
Identity = 59/161 (36.65%), Postives = 99/161 (61.49%), Query Frame = 2
Query:  188 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASEN---VNKLLVGNKCDLTDKKVVSYETAKAFADEIG--IPFMETSAKDSMNVEQAF 652
            + K+++IG+  VGK+ +L R+ D  ++ +   TIGVDF    V      V LQ+WDT+GQERFR++  SYYRGA   I+V+DVT++++  ++K W ++ I++    +      +++GNK D  ++ V      +   D IG  + + +TSAKD++N+EQ F
Sbjct:    7 IIKVVIIGEKSVGKTSILRRYVDKRFV-TLKPTIGVDF----VMVSENMVTLQLWDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDPILFPFIILGNKIDDPNRVVTEKAAIQWCKDNIGGNLTYFDTSAKDNINIEQVF 162          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RASM_RAT (Ras-related protein M-Ras OS=Rattus norvegicus GN=Mras PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 60/156 (38.46%), Postives = 89/156 (57.05%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKD-SMNVEQAF 652
            +KL+++GD GVGKS L ++F    ++  Y  TI  D  ++  E D +   L + DTAGQE F  +   Y R   G +IVY VTD+ SF +V ++   I R    E+   +LV NK DL   + V+ +  K  A +  IP++ETSAKD  +NV++ F
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 168          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RASM_MOUSE (Ras-related protein M-Ras OS=Mus musculus GN=Mras PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 60/156 (38.46%), Postives = 89/156 (57.05%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKD-SMNVEQAF 652
            +KL+++GD GVGKS L ++F    ++  Y  TI  D  ++  E D +   L + DTAGQE F  +   Y R   G +IVY VTD+ SF +V ++   I R    E+   +LV NK DL   + V+ +  K  A +  IP++ETSAKD  +NV++ F
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF 168          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RRAS2_MOUSE (Ras-related protein R-Ras2 OS=Mus musculus GN=Rras2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 55/163 (33.74%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 676
            ++L+++G  GVGKS L ++F    ++  Y  TI   +  + V  D +  +L I DTAGQE F  +   Y R   G ++V+ VTD+ SF  + ++  +I R    +    +L+GNK DL  ++ V+ E  +  A ++ + +ME SAK  MNV+QAF  +   I+
Sbjct:   15 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDD-RAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 176          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RRAS2_HUMAN (Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS2 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 55/163 (33.74%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 676
            ++L+++G  GVGKS L ++F    ++  Y  TI   +  + V  D +  +L I DTAGQE F  +   Y R   G ++V+ VTD+ SF  + ++  +I R    +    +L+GNK DL  ++ V+ E  +  A ++ + +ME SAK  MNV+QAF  +   I+
Sbjct:   15 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDD-RAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 176          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAS2_DROME (Ras-like protein 2 OS=Drosophila melanogaster GN=Ras64B PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 56/155 (36.13%), Postives = 87/155 (56.13%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 652
            +KL+++G  GVGKS + ++F    ++  Y  TI  D   +    D    KL I DTAGQE F  +   Y R   G ++V+ + D  SF+ + ++  +I R    +    L+VGNKCDL  ++ VS E A+  +  + IP++E SAK  +NV+QAF
Sbjct:    6 YKLVVVGGGGVGKSAITIQFIQSYFVTDYDPTIE-DSYTKQCNIDDVPAKLDILDTAGQEEFSAMREQYMRSGEGFLLVFALNDHSSFDEIPKFQRQILRVKDRDEFPMLMVGNKCDLKHQQQVSLEEAQNTSRNLMIPYIECSAKLRVNVDQAF 159          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RRAS_HUMAN (Ras-related protein R-Ras OS=Homo sapiens GN=RRAS PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.485e-20
Identity = 56/162 (34.57%), Postives = 87/162 (53.70%), Query Frame = 2
Query:  194 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 676
            KL+++G  GVGKS L ++F    ++  Y  TI  D   +    DG   +L I DTAGQE F  +   Y R  HG ++V+ + D++SFN V +   +I R    ++   +LVGNK DL  ++ V    A AF     + + E SAK  +NV++AF  +   ++
Sbjct:   31 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 191          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RASL_COPCI (24 kDa Ras-like protein OS=Coprinopsis cinerea GN=CC-RAS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.485e-20
Identity = 52/163 (31.90%), Postives = 89/163 (54.60%), Query Frame = 2
Query:  191 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 676
            +KL+++G  GVGKS L ++F    ++D Y  TI   ++ + +  D +   L + DTAGQE +  +   Y R   G ++VY +T + SF  +  +  +I R   ++    ++V NKCDL  ++ V     +  A   G  F+ETSAK  +NV++AF  +  +I+
Sbjct:   11 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCIIDD-EVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISIFHQQILRVKDQDSFPVIVVANKCDLEYERQVGMNEGRDLAKHFGCKFIETSAKQRINVDEAFSNLVREIR 172          
The following BLAST results are available for this feature:
BLAST of FC868583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB32D_DICDI6.664e-2132.73Ras-related protein Rab-32D OS=Dictyostelium disco... [more]
RAS_LENED6.664e-2133.13Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]
RAB7B_DICDI6.664e-2136.65Ras-related protein Rab-7B OS=Dictyostelium discoi... [more]
RASM_RAT8.703e-2138.46Ras-related protein M-Ras OS=Rattus norvegicus GN=... [more]
RASM_MOUSE8.703e-2138.46Ras-related protein M-Ras OS=Mus musculus GN=Mras ... [more]
RRAS2_MOUSE1.137e-2033.74Ras-related protein R-Ras2 OS=Mus musculus GN=Rras... [more]
RRAS2_HUMAN1.137e-2033.74Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS... [more]
RAS2_DROME1.137e-2036.13Ras-like protein 2 OS=Drosophila melanogaster GN=R... [more]
RRAS_HUMAN1.485e-2034.57Ras-related protein R-Ras OS=Homo sapiens GN=RRAS ... [more]
RASL_COPCI1.485e-2031.9024 kDa Ras-like protein OS=Coprinopsis cinerea GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31002C01EF AbioticL1 Citrus clementina cDNA clone C31002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868583 ID=FC868583; Name=FC868583; organism=Citrus clementina; type=EST; length=689bp
AAGCTGTCCCACTTTTCGGTTTCATCATCATCATCGACATTTTGCTTTCT
TCGTCAAATTCTCTCTCAATCTCACCTCCTTAGCTTGTCTGTGCCAAACT
CCCGGTCCAATCTCCAGCTGGACCGGTTCGATTCTGCGCGAACCCCCTCA
ACATCTTATTGCAGTCATGAATCCTGAATATGACTACTTGTTCAAGCTTT
TGCTGATTGGAGACTCTGGAGTTGGCAAATCGTGTCTTCTTCTGAGATTT
GCTGATGATTCGTACCTGGACAGTTACATTAGCACTATTGGGGTTGACTT
TAAAATTCGCACAGTGGAGCAAGACGGGAAGACTGTAAAACTCCAAATTT
GGGACACTGCAGGGCAAGAACGATTCAGGACAATCACTAGCAGCTACTAC
CGTGGAGCACATGGCATTATCATTGTTTATGATGTTACAGACCAAGAGAG
CTTCAACAACGTTAAGCAGTGGTTGAATGAAATTGATCGCTATGCAAGTG
AAAATGTAAACAAGCTTCTGGTTGGAAACAAGTGTGATCTCACTGATAAG
AAGGTTGTCTCTTATGAAACAGCGAAGGCATTTGCTGATGAAATTGGCAT
CCCGTTCATGGAGACCAGCGCAAAGGATTCTATGAACGTGGAACAAGCTT
TTATGGCTATGACTGCTGACATTAAGACAGGATGGCAAG
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