FC868583

Overview
NameFC868583
Unique NameFC868583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.418e-57
Identity = 101/166 (60.84%), Postives = 133/166 (80.12%), Query Frame = 2
Query:  179 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 676
            YD L KLLLIGDSGVGKSCLLLRF +D +  S+I+TIG+DFKIRT++   + VKLQ+WDTAGQERFRTIT++YYRGA GI++VYDVTD++SFNN++ W   +  YA+E V  +LVGNKCDL +K+VVS E  +A AD+ GIPF+E S+K ++NVE+ F ++   I+
Sbjct:    8 YDLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIR 173          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.536e-57
Identity = 104/169 (61.54%), Postives = 135/169 (79.88%), Query Frame = 2
Query:  167 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI 673
            M   YD+LFKLLLIGDSGVGK+CL++RFA+D++ ++YISTIG+DFKIRTVE +GK +KLQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A   A E GI F ETSAK SMNV++AF ++  DI
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDI 169          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.536e-57
Identity = 103/169 (60.95%), Postives = 135/169 (79.88%), Query Frame = 2
Query:  167 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI 673
            M   YD+LFKLLLIGDSGVGK+CL++RFA+D++ ++YISTIG+DFKIRTV+ +GK +KLQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A   A E GI F ETSAK SMNV++AF ++  DI
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.679e-56
Identity = 102/169 (60.36%), Postives = 135/169 (79.88%), Query Frame = 2
Query:  167 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI 673
            M   YD+LFKLLLIGDSGVGK+CL++RFA+D++ ++YISTIG+DF+IRTV+ +GK +KLQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A   A E GI F ETSAK SMNV++AF ++  DI
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.864e-56
Identity = 105/174 (60.34%), Postives = 137/174 (78.74%), Query Frame = 2
Query:  167 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI--KTG 682
            M   YD+LFKLLLIGDSGVGK+CL++RFA+D++  +YISTIG+DFKIRTVE +GK +KLQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A+  A E  I F ETSAK S+NV++AF ++  DI  KTG
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTG 174          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.380e-56
Identity = 104/174 (59.77%), Postives = 137/174 (78.74%), Query Frame = 2
Query:  167 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI--KTG 682
            M   YD+LFKLLLIGDSGVGK+CL++RFA+D++  +YISTIG+DFKIRTV+ +GK +KLQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A+  A E  I F ETSAK S+NV++AF ++  DI  KTG
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTG 174          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.088e-55
Identity = 100/165 (60.61%), Postives = 133/165 (80.61%), Query Frame = 2
Query:  179 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI 673
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK +KLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+ DK+VV     +  A E GI F ETSAK ++N+E+AF+ +  DI
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.088e-55
Identity = 100/165 (60.61%), Postives = 133/165 (80.61%), Query Frame = 2
Query:  179 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI 673
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK +KLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+ DK+VV     +  A E GI F ETSAK ++N+E+AF+ +  DI
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.088e-55
Identity = 100/165 (60.61%), Postives = 133/165 (80.61%), Query Frame = 2
Query:  179 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI 673
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK +KLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+ DK+VV     +  A E GI F ETSAK ++N+E+AF+ +  DI
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.421e-55
Identity = 100/165 (60.61%), Postives = 133/165 (80.61%), Query Frame = 2
Query:  179 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI 673
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK +KLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+ DK+VV     +  A E GI F ETSAK ++N+E+AF+ +  DI
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDI 170          
The following BLAST results are available for this feature:
BLAST of FC868583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RYL1_YARLI4.418e-5760.84Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB13_MESAU7.536e-5761.54Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB13_HUMAN7.536e-5760.95Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN1.679e-5660.36Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB13_RAT2.864e-5660.34Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB13_MOUSE6.380e-5659.77Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB10_PONAB1.088e-5560.61Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE1.088e-5560.61Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN1.088e-5560.61Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_CANFA1.421e-5560.61Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31002C01EF AbioticL1 Citrus clementina cDNA clone C31002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868583 ID=FC868583; Name=FC868583; organism=Citrus clementina; type=EST; length=689bp
AAGCTGTCCCACTTTTCGGTTTCATCATCATCATCGACATTTTGCTTTCT
TCGTCAAATTCTCTCTCAATCTCACCTCCTTAGCTTGTCTGTGCCAAACT
CCCGGTCCAATCTCCAGCTGGACCGGTTCGATTCTGCGCGAACCCCCTCA
ACATCTTATTGCAGTCATGAATCCTGAATATGACTACTTGTTCAAGCTTT
TGCTGATTGGAGACTCTGGAGTTGGCAAATCGTGTCTTCTTCTGAGATTT
GCTGATGATTCGTACCTGGACAGTTACATTAGCACTATTGGGGTTGACTT
TAAAATTCGCACAGTGGAGCAAGACGGGAAGACTGTAAAACTCCAAATTT
GGGACACTGCAGGGCAAGAACGATTCAGGACAATCACTAGCAGCTACTAC
CGTGGAGCACATGGCATTATCATTGTTTATGATGTTACAGACCAAGAGAG
CTTCAACAACGTTAAGCAGTGGTTGAATGAAATTGATCGCTATGCAAGTG
AAAATGTAAACAAGCTTCTGGTTGGAAACAAGTGTGATCTCACTGATAAG
AAGGTTGTCTCTTATGAAACAGCGAAGGCATTTGCTGATGAAATTGGCAT
CCCGTTCATGGAGACCAGCGCAAAGGATTCTATGAACGTGGAACAAGCTT
TTATGGCTATGACTGCTGACATTAAGACAGGATGGCAAG
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