FC868583

Overview
NameFC868583
Unique NameFC868583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.231e-50
Identity = 85/158 (53.80%), Postives = 126/158 (79.75%), Query Frame = 2
Query:  179 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 652
            +DY+FKLL+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+ D++V+S E  +   +++G  F ETSAKD++NV+Q F
Sbjct:   27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTF 184          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 5.231e-50
Identity = 85/158 (53.80%), Postives = 126/158 (79.75%), Query Frame = 2
Query:  179 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 652
            +DY+FKLL+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+ D++V+S E  +   +++G  F ETSAKD++NV+Q F
Sbjct:   27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTF 184          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.832e-50
Identity = 88/171 (51.46%), Postives = 126/171 (73.68%), Query Frame = 2
Query:  140 EPPQHLIAVMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 652
            EPP       +  +DY+FKLLLIG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL D++VV  E  +  AD++G  F E SAK+++NV+Q F
Sbjct:    6 EPPASPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.923e-50
Identity = 85/158 (53.80%), Postives = 125/158 (79.11%), Query Frame = 2
Query:  179 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 652
            +DY+FKLL+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +L GNKCD+ D++VVS E  +   +++G  F ETSAKD++NV+Q F
Sbjct:   27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTF 184          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.923e-50
Identity = 85/158 (53.80%), Postives = 125/158 (79.11%), Query Frame = 2
Query:  179 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 652
            +DY+FKLL+IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K +KLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +L GNKCD+ D++VVS E  +   +++G  F ETSAKD++NV+Q F
Sbjct:   27 FDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTF 184          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RABF1_DICDI (Ras-related protein RabF1 OS=Dictyostelium discoideum GN=rabF1-1 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.165e-49
Identity = 93/165 (56.36%), Postives = 130/165 (78.79%), Query Frame = 2
Query:  167 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAM 661
            M+ EY++LFK +L GDSGVGK+ +L R  DD++ +++I TIG++FKI+TV  +GK +KLQIWDTAG++RFR + +S+YRG HG+IIVYDVTDQ SF NV  W+ +I RYA+ENV K+++GNK DL  +KVV    A+ FAD + IPF E SAK S+N+E+AF+++
Sbjct:    1 MSKEYEHLFKFVLAGDSGVGKTSILFRITDDTFTETHI-TIGIEFKIKTVYIEGKPIKLQIWDTAGEKRFR-VHNSHYRGCHGVIIVYDVTDQRSFENVPSWIEDIRRYANENVIKIIIGNKNDLVSQKVVDPFLAQEFADSLDIPFKEISAKQSINIEEAFISL 163          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.165e-49
Identity = 85/158 (53.80%), Postives = 125/158 (79.11%), Query Frame = 2
Query:  179 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 652
            +DY+FKLL+IG+S VGK+  L R+ DDS+  +++ST+G+DFK++TV +  K VKLQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN+V+ W  +I  Y+ EN   +LVGNKCD+  ++VVS +  +  AD++G+ F ETSAK+++NV+  F
Sbjct:   19 FDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVF 176          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RABG1_DICDI (Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.522e-49
Identity = 93/163 (57.06%), Postives = 127/163 (77.91%), Query Frame = 2
Query:  188 LFKLLLIGDSGVGKSCLLLRFAD-DSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI 673
            +FK+LLIGDS VGK+ LLLRF D +++ ++ ++   VD+K + +  DG+T  LQIWDTAGQERFRTITSS+YRGAHG+++ YDVTDQ ++NNV  W+ EI RY    V+++LVGNKCDL D+K+V+   A+ +AD +GIPF+ETSA   +NVE+AFMAM  +I
Sbjct:    6 VFKILLIGDSAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVGNKCDLEDRKLVNASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEI 168          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.522e-49
Identity = 88/171 (51.46%), Postives = 126/171 (73.68%), Query Frame = 2
Query:  140 EPPQHLIAVMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 652
            EPP       +  +DY+FKLLLIG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV +  K +KLQIWDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ +N   +LVGNKCDL D++VVS E  +  A ++G  F E SAK+++NV+Q F
Sbjct:    6 EPPASPRDAADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVF 176          
BLAST of FC868583 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.391e-49
Identity = 87/167 (52.10%), Postives = 129/167 (77.25%), Query Frame = 2
Query:  179 YDYLFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 676
            YD  FK++L+GDSGVGK+CLL+RF D ++L  ++IST+G+DF+ + ++ DG  VKLQIWDTAGQERFR++T +YYR AH ++++YD+T+++SF+N++ WL EI  YA ++V  +L+GNK D T ++VV  E  +  A E G+PFMETSAK  +NV+ AF A+  ++K
Sbjct:   61 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELK 227          
The following BLAST results are available for this feature:
BLAST of FC868583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3C_HUMAN5.231e-5053.80Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB3C_BOVIN5.231e-5053.80Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
RAB3D_MOUSE6.832e-5051.46Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB3C_RAT8.923e-5053.80Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE8.923e-5053.80Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]
RABF1_DICDI1.165e-4956.36Ras-related protein RabF1 OS=Dictyostelium discoid... [more]
RAB3_CAEEL1.165e-4953.80Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RABG1_DICDI1.522e-4957.06Ras-related protein RabG1 OS=Dictyostelium discoid... [more]
RAB3D_RAT1.522e-4951.46GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB26_RAT3.391e-4952.10Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC31002C01EF AbioticL1 Citrus clementina cDNA clone C31002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868583 ID=FC868583; Name=FC868583; organism=Citrus clementina; type=EST; length=689bp
AAGCTGTCCCACTTTTCGGTTTCATCATCATCATCGACATTTTGCTTTCT
TCGTCAAATTCTCTCTCAATCTCACCTCCTTAGCTTGTCTGTGCCAAACT
CCCGGTCCAATCTCCAGCTGGACCGGTTCGATTCTGCGCGAACCCCCTCA
ACATCTTATTGCAGTCATGAATCCTGAATATGACTACTTGTTCAAGCTTT
TGCTGATTGGAGACTCTGGAGTTGGCAAATCGTGTCTTCTTCTGAGATTT
GCTGATGATTCGTACCTGGACAGTTACATTAGCACTATTGGGGTTGACTT
TAAAATTCGCACAGTGGAGCAAGACGGGAAGACTGTAAAACTCCAAATTT
GGGACACTGCAGGGCAAGAACGATTCAGGACAATCACTAGCAGCTACTAC
CGTGGAGCACATGGCATTATCATTGTTTATGATGTTACAGACCAAGAGAG
CTTCAACAACGTTAAGCAGTGGTTGAATGAAATTGATCGCTATGCAAGTG
AAAATGTAAACAAGCTTCTGGTTGGAAACAAGTGTGATCTCACTGATAAG
AAGGTTGTCTCTTATGAAACAGCGAAGGCATTTGCTGATGAAATTGGCAT
CCCGTTCATGGAGACCAGCGCAAAGGATTCTATGAACGTGGAACAAGCTT
TTATGGCTATGACTGCTGACATTAAGACAGGATGGCAAG
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