FC868588

Overview
NameFC868588
Unique NameFC868588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868588_ssr37 microsatellite FC868588_ssr37:37..54. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG2_XENLA (Protein NDRG2 OS=Xenopus laevis GN=ndrg2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.272e-17
Identity = 55/179 (30.73%), Postives = 93/179 (51.96%), Query Frame = 2
Query:  131 IKTSHGSLSVTIYGDQD--KPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFS-RXVRGNAQV 658
            I+T +G ++VTI G     +PA+VT+ D+ +++  CF  LF   + C ++  NF + HI+ PG E GA          S+D LA+ I  VL +    +++ +GV AGAYI   + + + + V GL+L++    A  W +W   K+        G+   + + +L   FS   + GN+ V
Sbjct:   39 IETPYGVVTVTIQGTPKPKRPAIVTFHDVGMDHKMCFDTLFKYEDMCEIV-KNFVVCHIDAPGQEDGATIYPPGYQYPSLDQLAETIPCVLQYLNFPSIIGIGVGAGAYIFAKYTLSHANTVEGLVLINIDPNAKGWMDWAAQKLT-------GLTQSISDKMLGHLFSAEEISGNSDV 209          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG4_MOUSE (Protein NDRG4 OS=Mus musculus GN=Ndrg4 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.834e-17
Identity = 57/189 (30.16%), Postives = 96/189 (50.79%), Query Frame = 2
Query:  131 IKTSHGSLSVTIYGDQ--DKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSRXVRGNAQVPESDIVQACRR 691
            I+T +G L V I G    ++PA++TY D+ LN+  CF   FF  E    +  +F + H++ PG + GA+         S++ LA  +  V+ HFG   V+ +GV AGAY+L  FA+ +   V GL+L++       W +W   K+        G+   + + +L   FS+       V  +++VQ+ R+
Sbjct:   11 IETPYGLLHVVIRGSPKGNRPAILTYHDVGLNHKLCFN-TFFNFEDMQEITKHFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQHFGFKYVIGIGVGAGAYVLAKFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLS-------GLTSTLPDTVLSHLFSQ----EELVNNTELVQSYRQ 187          
BLAST of FC868588 vs. ExPASy Swiss-Prot
Match: NDRG_DICDI (NDRG-like protein OS=Dictyostelium discoideum GN=DDB_G0270324 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.346e-16
Identity = 55/195 (28.21%), Postives = 98/195 (50.26%), Query Frame = 2
Query:   59 MADSSSDSVSIDMETPPPSGKDNLIKTSHGSL----SVTIYGDQDKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFS 631
            + +S  + V  + +   P+   + ++T HG L     +      + P +++Y DL LN+ +CF   F  P    +L +   I HI  PGHEF A  I   +   S+ ++A+ I  VL++F +   + +G  AG  ILT +++ Y   V+GL+LV  + K+ SW +W+ + V    L        V++ L+  Y++
Sbjct:   11 VTESPINVVVHNYDNNDPTETRHEVQTKHGKLVCFQKIGSNQSPNMPTIISYHDLGLNHTTCFSPFFNHPNMNHILPY-LNIIHIEAPGHEFNAETIPSSQ-YPSITEMAEDIQYVLDYFKVKVFIGLGAGAGGCILTQYSIFYPRSVVGLVLVGSVIKSFSWLDWVKSWVELTTLPSLKNPTGVRKYLIDHYYA 203          
The following BLAST results are available for this feature:
BLAST of FC868588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
NDRG2_XENLA1.272e-1730.73Protein NDRG2 OS=Xenopus laevis GN=ndrg2 PE=2 SV=1[more]
NDRG4_MOUSE2.834e-1730.16Protein NDRG4 OS=Mus musculus GN=Ndrg4 PE=1 SV=1[more]
NDRG_DICDI5.346e-1628.21NDRG-like protein OS=Dictyostelium discoideum GN=D... [more]

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Properties
Property NameValue
Genbank descriptionC31002C07EF AbioticL1 Citrus clementina cDNA clone C31002C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868588 ID=FC868588; Name=FC868588; organism=Citrus clementina; type=EST; length=722bp
GAATGAGGCTTTGAATTGAGAATCAGTAGAGAGAGAAGAGAGAGAGAGAG
AGAGAAAGATGGCAGATTCTTCAAGCGATTCGGTTTCCATTGATATGGAG
ACTCCTCCTCCTAGTGGCAAGGACAATCTTATAAAAACTTCCCATGGTTC
TTTGTCTGTTACCATCTATGGGGACCAGGACAAGCCAGCTCTTGTCACTT
ATCCTGATTTAGCTCTAAACTATATGTCCTGCTTTCAAGGATTATTCTTC
TGCCCAGAAGCATGTTCCTTGCTACTGCACAACTTTTGCATATATCATAT
AAATCCTCCTGGCCACGAGTTTGGAGCTGCGGCAATTAGTGATGATGAAC
CTGTACTCTCTGTTGATGATTTAGCGGATCAAATCGCTGAGGTTCTTAAC
CATTTTGGACTTGGTGCAGTGATGTGTATGGGGGTTACAGCTGGAGCTTA
CATTCTTACACTATTTGCTATGAAATATAGGCACCGTGTACTTGGGTTAA
TCCTAGTTTCTCCTCTGTGCAAAGCACCCTCTTGGACAGAATGGTTGTAT
AATAAGGTAATGTCAAATTTACTCTACTACTATGGCATGTGTGGGGTGGT
GAAGGAATTATTGCTAAAGCGGTACTTCAGCAGGNAAGTTCGTGGTAATG
CCCAAGTACCAGAATCTGATATAGTTCAGGCATGCAGAAGACTGCTGGAT
GAAAGACAGAGCTCAATGTTGG
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