FC868594

Overview
NameFC868594
Unique NameFC868594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868594 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.472e-16
Identity = 59/181 (32.60%), Postives = 93/181 (51.38%), Query Frame = 2
Query:   32 LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKVVTA 562
            ++ +   VE+  +++ I   E ++  + D  D ++  L+E     +F    R   +  +N AVGY+NVDV  A + GI V NTP V                 RR++EAD F R+G +      W P +F+G+ + G+TIG+IG GRIG A AR   +GF M ++YY   +    E+ + A
Sbjct:   18 MLREHFEVEVWPEEREIPR-EVLLEKVRD-VDALVTMLSERIDGEVFDNAPRL--RIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVAR-RAKGFGMRILYYSRTRKPEAEEELKA 193          
BLAST of FC868594 vs. ExPASy Swiss-Prot
Match: Y606_STAS1 (Putative 2-hydroxyacid dehydrogenase SSP0606 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0606 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.459e-14
Identity = 45/122 (36.89%), Postives = 61/122 (50.00%), Query Frame = 2
Query:  197 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKVVTA 562
            K  +N   G+NNVD++ A +  I V NTP                   RRI E D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR   + F MN++Y   +Q    E+ + A
Sbjct:   69 KIITNYGAGFNNVDIDYARQQNIDVTNTPKASTNSTAELTFALVLAVARRIPEGDKLCRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RAKAFDMNILYTGPHQKVDKEREIGA 189          
BLAST of FC868594 vs. ExPASy Swiss-Prot
Match: Y752_STAHJ (Putative 2-hydroxyacid dehydrogenase SH0752 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0752 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.250e-14
Identity = 45/122 (36.89%), Postives = 61/122 (50.00%), Query Frame = 2
Query:  197 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKVVTA 562
            K  +N   G+NNVDV  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA A+   + F M+++Y   +Q    E+ + A
Sbjct:   68 KIIANYGAGFNNVDVKYAREKDIDVTNTPKASTASTAELTFGLVLAVARRIVEGDKLSRTQGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAK-RAKAFDMDILYTGPHQKKEKEREIGA 188          
BLAST of FC868594 vs. ExPASy Swiss-Prot
Match: Y2577_STAA8 (Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02577 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 2
Query:  197 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 517
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC868594 vs. ExPASy Swiss-Prot
Match: Y2389_STAAR (Putative 2-hydroxyacid dehydrogenase SAR2389 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2389 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 2
Query:  197 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 517
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC868594 vs. ExPASy Swiss-Prot
Match: Y2305_STAAM (Putative 2-hydroxyacid dehydrogenase SAV2305 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2305 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 2
Query:  197 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 517
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC868594 vs. ExPASy Swiss-Prot
Match: Y2296_STAAC (Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=Staphylococcus aureus (strain COL) GN=SACOL2296 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 2
Query:  197 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 517
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC868594 vs. ExPASy Swiss-Prot
Match: Y2254_STAA3 (Putative 2-hydroxyacid dehydrogenase SAUSA300_2254 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2254 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 2
Query:  197 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 517
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC868594 vs. ExPASy Swiss-Prot
Match: Y2224_STAAW (Putative 2-hydroxyacid dehydrogenase MW2224 OS=Staphylococcus aureus (strain MW2) GN=MW2224 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 2
Query:  197 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 517
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC868594 vs. ExPASy Swiss-Prot
Match: Y2196_STAAS (Putative 2-hydroxyacid dehydrogenase SAS2196 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2196 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 2
Query:  197 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 517
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
The following BLAST results are available for this feature:
BLAST of FC868594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
GYAR_THEGJ3.472e-1632.60Glyoxylate reductase OS=Thermococcus gammatolerans... [more]
Y606_STAS11.459e-1436.89Putative 2-hydroxyacid dehydrogenase SSP0606 OS=St... [more]
Y752_STAHJ3.250e-1436.89Putative 2-hydroxyacid dehydrogenase SH0752 OS=Sta... [more]
Y2577_STAA81.613e-1338.32Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577... [more]
Y2389_STAAR1.613e-1338.32Putative 2-hydroxyacid dehydrogenase SAR2389 OS=St... [more]
Y2305_STAAM1.613e-1338.32Putative 2-hydroxyacid dehydrogenase SAV2305 OS=St... [more]
Y2296_STAAC1.613e-1338.32Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=... [more]
Y2254_STAA31.613e-1338.32Putative 2-hydroxyacid dehydrogenase SAUSA300_2254... [more]
Y2224_STAAW1.613e-1338.32Putative 2-hydroxyacid dehydrogenase MW2224 OS=Sta... [more]
Y2196_STAAS1.613e-1338.32Putative 2-hydroxyacid dehydrogenase SAS2196 OS=St... [more]

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Properties
Property NameValue
Genbank descriptionC31002D05EF AbioticL1 Citrus clementina cDNA clone C31002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868594 ID=FC868594; Name=FC868594; organism=Citrus clementina; type=EST; length=656bp
GCCTATGCCTGGAACCCGCTGGATCAGTCTCTTAATCGAACAAGATTGCC
GTGTTGAAATATGCACCCAGAAGAAAACTATACTCTCTGTTGAAGATATC
ATTGCTTTGATTGGTGACAAGTGCGATGGAGTCATTGGACAGTTGACAGA
GGACTGGGGAGAGACTTTGTTTGCTGCACTGAGTAGAGCAGGAGGAAAGG
CTTTTAGTAACATGGCTGTTGGTTACAACAATGTTGACGTTAATGCTGCT
AACAAATATGGTATTGCTGTTGGAAACACTCCTGGAGTACTTACAGAAAC
AACAGCAGAGTTAGCAGCTTCGCTCTCTCTAGCGGCTGCAAGAAGAATTG
TTGAAGCAGATGAGTTTATGAGAGCTGGCTTATACGATGGATGGCTTCCA
AATCTGTTCGTTGGGAACTTGCTCAAGGGACAGACTATTGGTGTGATTGG
AGCTGGTCGTATAGGATCTGCCTATGCTAGAATGATGGTTGAAGGGTTCA
AAATGAACCTCATTTACTATGATCTTTACCAAGCTACACGCTTGGAAAAG
GTTGTCACAGCTTATGGTCAGTTTCTAAAAGCCCATGGTGAACACCCTGT
CACTTGGAAAAGAGCCTCGTCCATGGATGAGGTGCTTCGAGAAGCAGATG
TGATAA
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