FC868594

Overview
NameFC868594
Unique NameFC868594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9346 contig Ccv1_Contig9346:138..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868594 vs. ExPASy Swiss-Prot
Match: Y2178_STAAB (Putative 2-hydroxyacid dehydrogenase SAB2178 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB2178 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 2
Query:  197 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 517
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAIARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC868594 vs. ExPASy Swiss-Prot
Match: Y2098_STAAN (Putative 2-hydroxyacid dehydrogenase SA2098 OS=Staphylococcus aureus (strain N315) GN=SA2098 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.613e-13
Identity = 41/107 (38.32%), Postives = 54/107 (50.47%), Query Frame = 2
Query:  197 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIY 517
            K  +N   G+NN+D+  A +  I V NTP                   RRIVE D+  R   +DGW P  F G  + G+TIG+IG G IGSA AR     F M+++Y
Sbjct:   68 KIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RARAFDMDVLY 173          
BLAST of FC868594 vs. ExPASy Swiss-Prot
Match: Y1888_STAEQ (Putative 2-hydroxyacid dehydrogenase SERP1888 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1888 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 42/122 (34.43%), Postives = 58/122 (47.54%), Query Frame = 2
Query:  197 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKVVTA 562
            K  +N   G+NN+DV  A +  I V NTP                   RRIVE D   R   +DGW P  F G  + G+TIG+IG G IG A A+     F M+++Y   ++    E+ + A
Sbjct:   68 KIIANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDHLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGGAVAK-RARAFDMDVLYTGPHRKEEKERDIGA 188          
BLAST of FC868594 vs. ExPASy Swiss-Prot
Match: Y1879_STAES (Putative 2-hydroxyacid dehydrogenase SE_1879 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1879 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 42/122 (34.43%), Postives = 58/122 (47.54%), Query Frame = 2
Query:  197 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKVVTA 562
            K  +N   G+NN+DV  A +  I V NTP                   RRIVE D   R   +DGW P  F G  + G+TIG+IG G IG A A+     F M+++Y   ++    E+ + A
Sbjct:   68 KIIANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDHLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGGAVAK-RARAFDMDVLYTGPHRKEEKERDIGA 188          
BLAST of FC868594 vs. ExPASy Swiss-Prot
Match: DHGY_HYPME (Glycerate dehydrogenase OS=Hyphomicrobium methylovorum PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 45/166 (27.11%), Postives = 79/166 (47.59%), Query Frame = 2
Query:   44 DCRVEICTQKKTILSVEDIIALIGDKC-DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 538
            D ++ I    +T  SV+ ++  + +KC   VI ++ E+              K  S  ++G++++D++A    GI VGN P                   RR  E ++ +R   + GW P   VG  L  +T+G+ G G IG A A+   +GF M++ Y+D ++A+
Sbjct:   32 DPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENI-------------KCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAK-RAQGFDMDIDYFDTHRAS 183          
BLAST of FC868594 vs. ExPASy Swiss-Prot
Match: TKRA_BACSU (Probable 2-ketogluconate reductase OS=Bacillus subtilis GN=yvcT PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.392e-11
Identity = 49/174 (28.16%), Postives = 71/174 (40.80%), Query Frame = 2
Query:   92 EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG----------------------KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTIGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 547
            E+I A IG+ C   + Q      + LF  L  A G                      K  SN +VGY+N D+ A  + G+   +TP                   RR+ E D F+RAG +         G  +  QT+G+IG GRIG   AR    GF M ++Y++ ++    E
Sbjct:   14 EEIEAFIGEHCRYEVWQEDTLPSDVLFEKLKEAEGLLTSGTSGPSINRELLEHAPKLKVVSNQSVGYDNFDIEAMKERGVVGTHTPYTLDDTVADLAFSLILSSARRVAELDRFVRAGKWGTVEEEALFGIDVHHQTLGIIGMGRIGEQAARRAKFGFDMEVLYHNRHRKQETE 187          
The following BLAST results are available for this feature:
BLAST of FC868594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
Y2178_STAAB1.613e-1338.32Putative 2-hydroxyacid dehydrogenase SAB2178 OS=St... [more]
Y2098_STAAN1.613e-1338.32Putative 2-hydroxyacid dehydrogenase SA2098 OS=Sta... [more]
Y1888_STAEQ6.129e-1334.43Putative 2-hydroxyacid dehydrogenase SERP1888 OS=S... [more]
Y1879_STAES6.129e-1334.43Putative 2-hydroxyacid dehydrogenase SE_1879 OS=St... [more]
DHGY_HYPME1.972e-1127.11Glycerate dehydrogenase OS=Hyphomicrobium methylov... [more]
TKRA_BACSU4.392e-1128.16Probable 2-ketogluconate reductase OS=Bacillus sub... [more]

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Properties
Property NameValue
Genbank descriptionC31002D05EF AbioticL1 Citrus clementina cDNA clone C31002D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868594 ID=FC868594; Name=FC868594; organism=Citrus clementina; type=EST; length=656bp
GCCTATGCCTGGAACCCGCTGGATCAGTCTCTTAATCGAACAAGATTGCC
GTGTTGAAATATGCACCCAGAAGAAAACTATACTCTCTGTTGAAGATATC
ATTGCTTTGATTGGTGACAAGTGCGATGGAGTCATTGGACAGTTGACAGA
GGACTGGGGAGAGACTTTGTTTGCTGCACTGAGTAGAGCAGGAGGAAAGG
CTTTTAGTAACATGGCTGTTGGTTACAACAATGTTGACGTTAATGCTGCT
AACAAATATGGTATTGCTGTTGGAAACACTCCTGGAGTACTTACAGAAAC
AACAGCAGAGTTAGCAGCTTCGCTCTCTCTAGCGGCTGCAAGAAGAATTG
TTGAAGCAGATGAGTTTATGAGAGCTGGCTTATACGATGGATGGCTTCCA
AATCTGTTCGTTGGGAACTTGCTCAAGGGACAGACTATTGGTGTGATTGG
AGCTGGTCGTATAGGATCTGCCTATGCTAGAATGATGGTTGAAGGGTTCA
AAATGAACCTCATTTACTATGATCTTTACCAAGCTACACGCTTGGAAAAG
GTTGTCACAGCTTATGGTCAGTTTCTAAAAGCCCATGGTGAACACCCTGT
CACTTGGAAAAGAGCCTCGTCCATGGATGAGGTGCTTCGAGAAGCAGATG
TGATAA
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