FC868595

Overview
NameFC868595
Unique NameFC868595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868595_ssr604 microsatellite FC868595_ssr604:604..613. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9364 contig Ccv1_Contig9364:1..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA1_NICPL (Plasma membrane ATPase 1 OS=Nicotiana plumbaginifolia GN=PMA1 PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.190e-85
Identity = 159/229 (69.43%), Postives = 178/229 (77.73%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSL-RTRPDE---MMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETTAFS 679
            DF PFM LIIAILNDGTIMTISKDRVKPS  PDSWKL EIF TG+VLG YLA+MTV+FFW   KT+FF   FGV +L +T  D+   + +A+YLQVSIISQALIFVTRSRSWSF+ERPG LL  AFVIAQLVAT IAVYANWSFA IEG GWGWAGVIW+Y+LV Y PLDI+KF IRY LSG+AWD + E + AFT KKD+GK            TLHGLQ P+T  FS
Sbjct:  675 DFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGGYLAMMTVIFFWAAYKTNFFPHVFGVSTLEKTATDDFRKLASAIYLQVSIISQALIFVTRSRSWSFVERPGFLLVIAFVIAQLVATLIAVYANWSFAAIEGIGWGWAGVIWIYNLVFYIPLDIIKFFIRYALSGRAWDLVFERRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDTKLFS 903          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA1_SOLLC (Plasma membrane ATPase 1 OS=Solanum lycopersicum GN=LHA1 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 6.372e-85
Identity = 159/229 (69.43%), Postives = 178/229 (77.73%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSL-RTRPDE---MMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETTAFS 679
            DF PFM LIIAILNDGTIMTISKDRVKPS  PDSWKL EIF TGVVLG YLA+MTV+FFW   KT+FF   FGV +L +T  D+   + +A+YLQVS ISQALIFVTRSRSWSF+ERPGLLL  AF +AQLVAT IAVYANWSFA IEG GWGWAGVIWLY++VTY PLD++KF IRY LSGKAWD +LE + AFT KKD+GK            TLHGLQ P+   FS
Sbjct:  674 DFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYKTNFFPRIFGVSTLEKTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVFAFFVAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVTYIPLDLIKFLIRYALSGKAWDLVLEQRIAFTRKKDFGKELRELQWAHAQRTLHGLQVPDPKIFS 902          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA4_ARATH (ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=AHA4 PE=1 SV=2)

HSP 1 Score: 313.153 bits (801), Expect = 8.322e-85
Identity = 154/229 (67.25%), Postives = 180/229 (78.60%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSL-RTRPDE---MMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETTAFS 679
            DF PFM LIIAILNDGTIMTISKDRVKPS  PDSWKL EIFATGVV GSY+A+MTV+FFW+  KTDFF   FGV +L +T  D+   + +A+YLQVSIISQALIFVTRSRSWSF+ERPG+ L  AF++AQLVAT IAVYANWSFA IEG GWGWAGVIWLY+++ Y PLD +KF IRY LSG+AWD ++E + AFT +KD+GK            TLHGLQ P+T  F+
Sbjct:  678 DFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLSEIFATGVVFGSYMAMMTVIFFWVSYKTDFFPRTFGVATLEKTAHDDFRKLASAIYLQVSIISQALIFVTRSRSWSFVERPGIFLMIAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDFIKFFIRYALSGRAWDLVIEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDTKMFT 906          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA11_ARATH (ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=AHA11 PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.087e-84
Identity = 155/228 (67.98%), Postives = 179/228 (78.51%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSL-RTRPDE---MMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETTAF 676
            DF PFM LIIAILNDGTIMTISKDRVKPS  PDSWKL EIFATGVV GSY+A+MTV+FFW   KTDFF   FGV +L +T  D+   + +A+YLQVSIISQALIFVTRSRSWS++ERPG+LL  AF++AQLVAT IAVYANWSFA IEG GWGWAGVIWLY++V Y PLDI+KF IRY LSG+AWD ++E + AFT +KD+GK            TLHGLQ P+   F
Sbjct:  674 DFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLSEIFATGVVFGSYMAMMTVIFFWAAYKTDFFPRTFGVSTLEKTAHDDFRKLASAIYLQVSIISQALIFVTRSRSWSYVERPGMLLVVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVFYIPLDIIKFLIRYALSGRAWDLVIEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKMF 901          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA2_SOLLC (Plasma membrane ATPase 2 (Fragment) OS=Solanum lycopersicum GN=LHA2 PE=3 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.162e-84
Identity = 158/229 (69.00%), Postives = 177/229 (77.29%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSL-RTRPDE---MMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETTAFS 679
            DF PFM LIIAILNDGTIMTISKDRVKPS  PDSWKL EIF TGVVLG YLA+MTV+FFW   +T FF   FGV +L RT  D+   + +A+YLQVS ISQALIFVTRSRSWSF+ERPGLLL  A ++AQLVAT IAVYA+WSFA IEG GWGWAGVIWLY+LV YFPLDI+KF IRY LSG+AWD +LE + AFT KKD+GK            TLHGLQ P+   FS
Sbjct:  422 DFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYETQFFPRVFGVSTLQRTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFVERPGLLLVVALIVAQLVATLIAVYASWSFAAIEGIGWGWAGVIWLYNLVFYFPLDIIKFLIRYALSGRAWDLVLEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDIKLFS 650          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA3_NICPL (Plasma membrane ATPase 3 OS=Nicotiana plumbaginifolia GN=PMA3 PE=1 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 4.567e-83
Identity = 157/229 (68.56%), Postives = 175/229 (76.42%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSL-RTRPDE---MMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQPPETTAFS 679
            DF PFM LIIAILNDGTIMTISKDRVKPS  PDSWKL EIF TGVVLG YLA+MTV+FFW   KT+FF   FGV +L +T  D+   + +A+YLQVS ISQALIFVTRSRSWSF+ERPGLLL  AF IAQLVAT IAVYANWSFA IEG GWGWAGVIWLY++V Y PLD+  F IRY LSGKAWD ++E + AFT KKD+GK            TLHGLQ P+   FS
Sbjct:  674 DFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYLAMMTVIFFWAAYKTNFFPRVFGVSTLEKTATDDFRKLASAIYLQVSTISQALIFVTRSRSWSFMERPGLLLVVAFFIAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVFYIPLDLXXFLIRYALSGKAWDLVIEQRIAFTRKKDFGKEQRELQWAHAQRTLHGLQVPDPKIFS 902          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA10_ARATH (ATPase 10, plasma membrane-type OS=Arabidopsis thaliana GN=AHA10 PE=2 SV=2)

HSP 1 Score: 281.182 bits (718), Expect = 3.505e-75
Identity = 133/199 (66.83%), Postives = 162/199 (81.41%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGK 601
            DF PFM LIIAILNDGTIMTISKDRV+PS  P+SWKL +IFATG+V+G+YLA++TV+F+W++  T FF   F V+S+    +++ +A+YLQVSIISQALIFVTRSR WSF ERPG LL  AF++AQL AT IAVYAN SFA+I G GW WAGVIWLYSL+ Y PLD++KF   Y LSG+AW+ +L+ KTAFT KKDYGK
Sbjct:  677 DFPPFMVLIIAILNDGTIMTISKDRVRPSPTPESWKLNQIFATGIVIGTYLALVTVLFYWIIVSTTFFEKHFHVKSIANNSEQVSSAMYLQVSIISQALIFVTRSRGWSFFERPGTLLIFAFILAQLAATLIAVYANISFAKITGIGWRWAGVIWLYSLIFYIPLDVIKFVFHYALSGEAWNLVLDRKTAFTYKKDYGK 875          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA7_ARATH (ATPase 7, plasma membrane-type OS=Arabidopsis thaliana GN=AHA7 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.246e-72
Identity = 137/230 (59.57%), Postives = 165/230 (71.74%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRP-------------DEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKXXXXXXXXXXXXTLHGLQ 655
            DF PFM L+IAILNDGTIMTISKDRVKPS  PD WKLKEIFATGVVLG+YLAIMTVVFFW   +T+FF + F VR+                  ++M +A+YLQVS ISQALIFVTRSRSWSF+ERPG LL  AF+IAQLVA+ I+  ANW FA I   GWGW GVIW++++VTY  LD +KF +RY LSGK+WD ++E +TA T KK++G+            T HGL+
Sbjct:  670 DFPPFMVLVIAILNDGTIMTISKDRVKPSPTPDCWKLKEIFATGVVLGAYLAIMTVVFFWAAYETNFFHNIFHVRNFNQHHFKMKDKKVAAHLNEQMASAVYLQVSTISQALIFVTRSRSWSFVERPGFLLVIAFLIAQLVASVISAMANWPFAGIRSIGWGWTGVIWIFNIVTYMLLDPIKFLVRYALSGKSWDRMVEGRTALTGKKNFGQEERMAAWATEKRTQHGLE 899          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMAX_ARATH (Putative ATPase, plasma membrane-like OS=Arabidopsis thaliana GN=At4g11730 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.293e-61
Identity = 120/188 (63.83%), Postives = 142/188 (75.53%), Query Frame = 2
Query:    5 DFSPFMSLIIAILNDGTIMTISKDRV-KPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLEN 565
            DFSPFM L IA+LN+ T   I+ D V  PS  PDS KLKEIFATGVV GSY+A++TVVFFW   +TD F   F VR LR    EMM ALYLQVSI+SQAL FV +SRSW F+ERPG LL  +FV  Q +AT +AVYA+W  ARIEG GW WAGVIWLY+++ +FPLDI+KFGIRYIL+GKA  +L +N
Sbjct:  582 DFSPFMVLAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDLRGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKA-QSLFDN 768          
BLAST of FC868595 vs. ExPASy Swiss-Prot
Match: PMA1_DICDI (Probable plasma membrane ATPase OS=Dictyostelium discoideum GN=patB PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 6.903e-39
Identity = 83/193 (43.01%), Postives = 115/193 (59.59%), Query Frame = 2
Query:    8 FSPFMSLIIAILNDGTIMTISKDRVKPSTQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSF---------------ARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGK 541
            F    ++IIAILNDGT++TISKDRV+   +PD W L E+F   +  G YL   T+VFF ++    +F DA  +R L    +E+   +YLQVSI   A IFV+RS+ +S+ ERPG L+  AFV++Q+VATFI VY    +                  +GCGWGWA   W++  + Y P+D +K G+ YIL GK
Sbjct:  811 FPTIATVIIAILNDGTMLTISKDRVRARNEPDQWNLFEVFTMALCYGFYLVGSTIVFFAIIHDGTWFHDAINLRIL--TDNELRGLIYLQVSISGLATIFVSRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNFQGCGWGWAVCAWIWCFLWYIPMDFIKLGVTYILRGK 1001          
The following BLAST results are available for this feature:
BLAST of FC868595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PMA1_NICPL2.190e-8569.43Plasma membrane ATPase 1 OS=Nicotiana plumbaginifo... [more]
PMA1_SOLLC6.372e-8569.43Plasma membrane ATPase 1 OS=Solanum lycopersicum G... [more]
PMA4_ARATH8.322e-8567.25ATPase 4, plasma membrane-type OS=Arabidopsis thal... [more]
PMA11_ARATH1.087e-8467.98ATPase 11, plasma membrane-type OS=Arabidopsis tha... [more]
PMA2_SOLLC3.162e-8469.00Plasma membrane ATPase 2 (Fragment) OS=Solanum lyc... [more]
PMA3_NICPL4.567e-8368.56Plasma membrane ATPase 3 OS=Nicotiana plumbaginifo... [more]
PMA10_ARATH3.505e-7566.83ATPase 10, plasma membrane-type OS=Arabidopsis tha... [more]
PMA7_ARATH1.246e-7259.57ATPase 7, plasma membrane-type OS=Arabidopsis thal... [more]
PMAX_ARATH1.293e-6163.83Putative ATPase, plasma membrane-like OS=Arabidops... [more]
PMA1_DICDI6.903e-3943.01Probable plasma membrane ATPase OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionC31002D06EF AbioticL1 Citrus clementina cDNA clone C31002D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868595 ID=FC868595; Name=FC868595; organism=Citrus clementina; type=EST; length=679bp
GTTAGACTTTTCTCCATTCATGTCTCTGATTATTGCCATTTTAAATGACG
GAACAATCATGACAATTTCAAAGGATCGTGTTAAGCCGTCCACTCAACCA
GACAGCTGGAAACTAAAAGAGATTTTTGCCACTGGCGTTGTGCTTGGAAG
TTACTTGGCCATCATGACTGTTGTATTCTTCTGGCTAATGAGGAAGACTG
ACTTTTTCTCGGACGCGTTTGGTGTAAGATCATTAAGAACTAGACCCGAT
GAGATGATGGCCGCTTTATACTTGCAAGTCAGTATTATTAGCCAGGCCCT
TATTTTTGTCACGAGGTCCCGCAGCTGGTCCTTTATTGAACGCCCTGGAC
TTCTCTTAGCCACGGCATTTGTGATTGCTCAGCTTGTAGCAACTTTCATA
GCGGTCTATGCAAATTGGAGTTTTGCACGGATAGAGGGTTGTGGCTGGGG
CTGGGCCGGGGTAATCTGGCTTTACAGTCTGGTAACATATTTTCCTCTTG
ACATACTCAAGTTCGGAATCCGCTACATCCTCAGTGGAAAGGCTTGGGAT
ACTCTTCTGGAGAACAAGACTGCCTTCACTACCAAGAAAGACTACGGTAA
AGAAGAGAGAGAGGCACAATGGGCAGCCGCACAAAGGACCTTGCACGGTC
TTCAACCACCCGAAACAACCGCATTTTCT
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