FC868602

Overview
NameFC868602
Unique NameFC868602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_SULSO (Inorganic pyrophosphatase OS=Sulfolobus solfataricus GN=ppa PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.614e-18
Identity = 43/79 (54.43%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  223 LEIGPG--APTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            +++GPG  AP   NV +EI  GS +KYE D++  +IKVDR+LY+S+VYP NYGFIP TL ED D +DVL+L +  ++PG
Sbjct:    1 MKLGPGKKAPDEINVFIEIPMGSNIKYEYDEEEDIIKVDRVLYTSMVYPFNYGFIPETLEEDGDPLDVLVLGNYSLMPG 79          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_SULAC (Inorganic pyrophosphatase OS=Sulfolobus acidocaldarius GN=ppa PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.596e-18
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  223 LEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            L  G  AP + NV+VEI +GS +KYE D + G+IKVDR+LY+S+ YP NYGFIP TL ED D +DVL++ +  + PG
Sbjct:    3 LSPGKNAPDVVNVLVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFIPGTLEEDGDPLDVLVITNYQLYPG 79          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_THEAC (Inorganic pyrophosphatase OS=Thermoplasma acidophilum GN=ppa PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 8.012e-18
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  214 WHDLEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            +H + +GP  P    V+VEI +GS+VKYE+ K    + VDR+LYSSVVYP +YG IPRTL  D D MDV++L+ +P  PG
Sbjct:    5 YHSVPVGPKPPEEVYVIVEIPRGSRVKYEIAKDFPGMLVDRVLYSSVVYPVDYGLIPRTLYYDGDPMDVMVLISQPTFPG 84          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_THEEB (Inorganic pyrophosphatase OS=Thermosynechococcus elongatus (strain BP-1) GN=ppa PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.331e-17
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  244 PTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            P + NV+VEI+ GS+ KYE DK+  +  +DR+LYS+VVYP++YGFIP TL +D D +D L++M EP  PG
Sbjct:   14 PGVVNVLVEIAGGSRNKYEFDKEMKVFALDRVLYSAVVYPYDYGFIPNTLADDGDPLDGLVMMDEPTFPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_HALSA (Inorganic pyrophosphatase OS=Halobacterium salinarium GN=ppa PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.511e-16
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  205 AHPWHDLEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            A+ W DLE GP AP +   VVE  KG + KYE DK    + +DR+L+S+V YP +YGFIP++  +D D  DVL+L+ +   PG
Sbjct:    2 ANLWEDLETGPDAPDVIYAVVECLKGERNKYEYDKDIPGVVLDRVLHSNVHYPSDYGFIPQSYYDDGDPFDVLVLVEDQTFPG 84          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_SYNY3 (Inorganic pyrophosphatase OS=Synechocystis sp. (strain PCC 6803) GN=ppa PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 5.741e-16
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query:  220 DLEIGPGAPT--IFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            DL   P  P   + NV++EI  GSK KYE DK      +DR+LYSSV YP++YGFIP TL +D D +D +++M +P  PG
Sbjct:    2 DLSRIPAQPKAGLINVLIEIPAGSKNKYEFDKDMNCFALDRVLYSSVQYPYDYGFIPNTLADDGDPLDGMVIMDQPTFPG 81          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_BRUSU (Inorganic pyrophosphatase OS=Brucella suis GN=ppa PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.741e-16
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  223 LEIGPGAPTIFNVVVEISKGSK-VKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            + IG   P   NV++E+  G + +KYE+DKK G + VDR LY+ + YP NYGF+P TL ED D +DVL+    P++PG
Sbjct:    6 ISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFVPHTLSEDGDPIDVLVCNTRPLIPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_BRUME (Inorganic pyrophosphatase OS=Brucella melitensis GN=ppa PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.741e-16
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  223 LEIGPGAPTIFNVVVEISKGSK-VKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            + IG   P   NV++E+  G + +KYE+DKK G + VDR LY+ + YP NYGF+P TL ED D +DVL+    P++PG
Sbjct:    6 ISIGSNPPEDVNVIIEVPVGGQPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFVPHTLSEDGDPIDVLVCNTRPLIPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_BARBK (Inorganic pyrophosphatase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ppa PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.793e-16
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  220 DLEIGPGAPTIFNVVVEISKGSK-VKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            ++ IG   P   NV++E+   S+ VKYE+DKK+G + VDR + +S+VYP NYGFIP TL ED+D +DVL+    P++PG
Sbjct:    5 EIPIGNNPPEDVNVIIEVPVDSQPVKYEMDKKSGSLFVDRFISTSMVYPGNYGFIPHTLSEDSDPIDVLVCNTRPLIPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_ANASP (Inorganic pyrophosphatase OS=Anabaena sp. (strain PCC 7120) GN=ppa PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.671e-15
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 1
Query:  244 PTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            P + N+++EI+ GS+ KYE DK      +DR+LYSSV YP++YGF+P TL +D D +D ++++ EP  PG
Sbjct:   12 PGVINILIEIAGGSQNKYEFDKDLEAFALDRVLYSSVKYPYDYGFVPNTLADDGDPLDGMVIIDEPTFPG 81          
The following BLAST results are available for this feature:
BLAST of FC868602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
IPYR_SULSO1.614e-1854.43Inorganic pyrophosphatase OS=Sulfolobus solfataric... [more]
IPYR_SULAC3.596e-1854.55Inorganic pyrophosphatase OS=Sulfolobus acidocalda... [more]
IPYR_THEAC8.012e-1852.50Inorganic pyrophosphatase OS=Thermoplasma acidophi... [more]
IPYR_THEEB2.331e-1754.29Inorganic pyrophosphatase OS=Thermosynechococcus e... [more]
IPYR_HALSA1.511e-1646.99Inorganic pyrophosphatase OS=Halobacterium salinar... [more]
IPYR_SYNY35.741e-1648.75Inorganic pyrophosphatase OS=Synechocystis sp. (st... [more]
IPYR_BRUSU5.741e-1647.44Inorganic pyrophosphatase OS=Brucella suis GN=ppa ... [more]
IPYR_BRUME5.741e-1647.44Inorganic pyrophosphatase OS=Brucella melitensis G... [more]
IPYR_BARBK9.793e-1649.37Inorganic pyrophosphatase OS=Bartonella bacillifor... [more]
IPYR_ANASP1.671e-1547.14Inorganic pyrophosphatase OS=Anabaena sp. (strain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31002E03EF AbioticL1 Citrus clementina cDNA clone C31002E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868602 ID=FC868602; Name=FC868602; organism=Citrus clementina; type=EST; length=453bp
GGTTCTGTGAAAGTGAAAGTTGACCAACCAGCAACCCTTCGATCTCTTGC
TAGTAGCTACATTTCCGTGTCTTCATCAACAATCAAAGAGATGAGTGAGG
AGGCGGCGCATGGAGATGGAAGTGAAGCTGTTGAAGCTCCACAGGGTTCA
GTTCCTCGGCTGAACGAGAGGATCCTCTCATCTATGTCGAGGAGATCAGT
TGCTGCACATCCTTGGCATGATCTTGAAATTGGACCTGGAGCTCCCACCA
TCTTCAATGTTGTTGTTGAGATATCAAAGGGAAGTAAGGTCAAATATGAA
CTTGACAAGAAAACAGGATTGATTAAGGTTGATCGAATTCTTTATTCCTC
TGTGGTCTATCCTCATAACTATGGTTTCATCCCTCGCACATTATGTGAAG
ATAATGATNCCATGGATGTCTTGATTCTTATGCACGAGCCAGTCCTTCCC
GGA
back to top