FC868602

Overview
NameFC868602
Unique NameFC868602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_LEIXX (Inorganic pyrophosphatase OS=Leifsonia xyli subsp. xyli GN=ppa PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.182e-15
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 1
Query:  247 TIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            T ++VV+EI KGS+ KYE+D +TG + +DR+L+++ VYP +YGF   TL +D D +DVL+L+  PV PG
Sbjct:    2 TAYDVVIEIPKGSRNKYEVDHETGRVYLDRVLFTAFVYPADYGFFENTLGDDGDPLDVLVLLEYPVFPG 70          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_RHIME (Inorganic pyrophosphatase OS=Rhizobium meliloti GN=ppa PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.722e-15
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  223 LEIGPGAPTIFNVVVEISKGSK-VKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            + IG   P   NV+VE+  G   +KYE+DK+ G + VDR LY+ + YP NYGF+P TL +D D +DVLI    P++PG
Sbjct:    6 ISIGKNPPEDVNVIVEVPVGGHPIKYEMDKEAGTLVVDRFLYTPMTYPGNYGFVPHTLSDDGDPIDVLICNTRPLVPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_MYCLE (Inorganic pyrophosphatase OS=Mycobacterium leprae GN=ppa PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.722e-15
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  253 FNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            F+V +EI KG + KYE+D KTG +++DR LY+ + YP +YGFI  TL ED D +D L+L+ EP+ PG
Sbjct:    3 FDVTIEIPKGQRNKYEVDHKTGRVRLDRYLYTPMAYPTDYGFIEDTLGEDGDPLDALVLLPEPLFPG 69          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_PICTO (Inorganic pyrophosphatase OS=Picrophilus torridus GN=ppa PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.860e-15
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 1
Query:  214 WHDLEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            WH +  GP  P    VVVEI KG + KYE+ K+   IK+DRI+YSS VYP  YG IP+T   D D +D ++ M +   PG
Sbjct:    8 WHQVPPGPNPPDEVYVVVEIPKGERNKYEIAKEFPGIKLDRIIYSSYVYPLEYGLIPQTYYSDGDPIDAMVFMSQSTYPG 87          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_STRCO (Inorganic pyrophosphatase OS=Streptomyces coelicolor GN=ppa PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.348e-15
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  253 FNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            F+V +EI KGS+ KYE+D +TG I++DR L++S  YP +YGF+  TL ED D +D L+++ EP  PG
Sbjct:    3 FDVTIEIPKGSRNKYEVDHETGRIRLDRRLFTSTAYPTDYGFVENTLGEDGDPLDALVILDEPTFPG 69          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_NANEQ (Inorganic pyrophosphatase OS=Nanoarchaeum equitans GN=ppa PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.348e-15
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  265 VEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            +E+ KGS VKYE +   G +KVDRILY ++ YP+NYGFIP TL ED D +DVL++  EP++PG
Sbjct:    7 IEVPKGSNVKYEYED--GKLKVDRILYGAMFYPYNYGFIPETLEEDGDPLDVLVITEEPLVPG 67          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_AGRT5 (Inorganic pyrophosphatase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ppa PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.348e-15
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  223 LEIGPGAPTIFNVVVEISKGSK-VKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            + IG   P   NV+VE+  G   +KYE+DK  G + VDR LY+ + YP NYGF+P TL +D D +DVLI    P++PG
Sbjct:    6 ISIGKNPPDDINVIVEVPVGGHPIKYEMDKDAGALIVDRFLYTPMTYPGNYGFVPHTLSDDGDPIDVLICNTRPLVPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_THET8 (Inorganic pyrophosphatase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=ppa PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 8.291e-15
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  223 LEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            L +G  AP + ++V+E+ +GS  KYE D   G IK+DR+L  +  YP +YGFIP TL ED D +D L+L   P+LPG
Sbjct:    7 LPVGDKAPEVVHMVIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPSTLAEDGDPLDGLVLSTYPLLPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_XANCP (Inorganic pyrophosphatase OS=Xanthomonas campestris pv. campestris GN=ppa PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.083e-14
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  232 GPGAPTIFNVVVEISKGSK-VKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            G   P   NVV+EI K S+ VKYE+DK +G I VDRIL + + YP NYG++P TLC D D  DVL+++  P++PG
Sbjct:    9 GKNLPEEINVVIEIPKDSEPVKYEVDKASGAIFVDRILSTPMRYPCNYGYVPNTLCGDGDPADVLVVLPLPLVPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_XANAC (Inorganic pyrophosphatase OS=Xanthomonas axonopodis pv. citri GN=ppa PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.083e-14
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  232 GPGAPTIFNVVVEISKGSK-VKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            G   P   NVV+EI K S+ VKYE+DK +G I VDRIL + + YP NYG++P TLC D D  DVL+++  P++PG
Sbjct:    9 GKNLPEEINVVIEIPKDSEPVKYEVDKASGAIFVDRILSTPMRYPCNYGYVPNTLCGDGDPADVLVVLPLPLVPG 83          
The following BLAST results are available for this feature:
BLAST of FC868602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
IPYR_LEIXX2.182e-1550.72Inorganic pyrophosphatase OS=Leifsonia xyli subsp.... [more]
IPYR_RHIME3.722e-1547.44Inorganic pyrophosphatase OS=Rhizobium meliloti GN... [more]
IPYR_MYCLE3.722e-1552.24Inorganic pyrophosphatase OS=Mycobacterium leprae ... [more]
IPYR_PICTO4.860e-1547.50Inorganic pyrophosphatase OS=Picrophilus torridus ... [more]
IPYR_STRCO6.348e-1550.75Inorganic pyrophosphatase OS=Streptomyces coelicol... [more]
IPYR_NANEQ6.348e-1557.14Inorganic pyrophosphatase OS=Nanoarchaeum equitans... [more]
IPYR_AGRT56.348e-1547.44Inorganic pyrophosphatase OS=Agrobacterium tumefac... [more]
IPYR_THET88.291e-1548.05Inorganic pyrophosphatase OS=Thermus thermophilus ... [more]
IPYR_XANCP1.083e-1452.00Inorganic pyrophosphatase OS=Xanthomonas campestri... [more]
IPYR_XANAC1.083e-1452.00Inorganic pyrophosphatase OS=Xanthomonas axonopodi... [more]

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Properties
Property NameValue
Genbank descriptionC31002E03EF AbioticL1 Citrus clementina cDNA clone C31002E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868602 ID=FC868602; Name=FC868602; organism=Citrus clementina; type=EST; length=453bp
GGTTCTGTGAAAGTGAAAGTTGACCAACCAGCAACCCTTCGATCTCTTGC
TAGTAGCTACATTTCCGTGTCTTCATCAACAATCAAAGAGATGAGTGAGG
AGGCGGCGCATGGAGATGGAAGTGAAGCTGTTGAAGCTCCACAGGGTTCA
GTTCCTCGGCTGAACGAGAGGATCCTCTCATCTATGTCGAGGAGATCAGT
TGCTGCACATCCTTGGCATGATCTTGAAATTGGACCTGGAGCTCCCACCA
TCTTCAATGTTGTTGTTGAGATATCAAAGGGAAGTAAGGTCAAATATGAA
CTTGACAAGAAAACAGGATTGATTAAGGTTGATCGAATTCTTTATTCCTC
TGTGGTCTATCCTCATAACTATGGTTTCATCCCTCGCACATTATGTGAAG
ATAATGATNCCATGGATGTCTTGATTCTTATGCACGAGCCAGTCCTTCCC
GGA
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