FC868602

Overview
NameFC868602
Unique NameFC868602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_CAUCR (Inorganic pyrophosphatase OS=Caulobacter crescentus GN=ppa PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.083e-14
Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  223 LEIGPGAPTIFNVVVEISKGSK-VKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            + +G   P   N ++EI +G + VKYE+DK++G + VDR L++++ YP NYGFIP TL +D D  D++++   PV+PG
Sbjct:    6 IAVGVNPPYDLNAIIEIPQGGEPVKYEIDKESGALMVDRFLHTAMFYPANYGFIPHTLADDGDPADIMVVGPTPVVPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_BRAJA (Inorganic pyrophosphatase OS=Bradyrhizobium japonicum GN=ppa PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.083e-14
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  223 LEIGPGAPTIFNVVVEISKGSK-VKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            + IG   P   NV++E+  G + +KYE+DK+ G + VDR LY+ + YP NYGFIP TL +D D  DVLI+    ++PG
Sbjct:    6 ISIGKNVPQDVNVIIEVPVGGEPIKYEMDKEAGTLVVDRFLYTPMRYPGNYGFIPHTLSDDGDPCDVLIINTRAIIPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_GLUOX (Inorganic pyrophosphatase OS=Gluconobacter oxydans GN=ppa PE=3 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.414e-14
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  226 EIGPGA--PTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            +I PG   P   NVV+EI +GS+VKYE+DK +G + VDR L++ + YP  YGFIP TL  D D  D L+L    V+PG
Sbjct:    5 KISPGKDLPNDINVVIEIPQGSQVKYEVDKDSGALVVDRFLFTPMAYPAAYGFIPGTLAADGDPADALVLTPAAVVPG 82          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_XYLFT (Inorganic pyrophosphatase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ppa PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.847e-14
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  232 GPGAPTIFNVVVEISKGSK-VKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            G   P   NV++EI K S+ VKYE+DK +G I VDRIL + + YP NYG++P TLC D D +DV++++  P++PG
Sbjct:    9 GNNLPEEINVIIEIPKDSEPVKYEVDKASGAIFVDRILSTPMRYPCNYGYVPNTLCGDGDPVDVMVVLPLPLVPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_XYLFA (Inorganic pyrophosphatase OS=Xylella fastidiosa GN=ppa PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.847e-14
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  232 GPGAPTIFNVVVEISKGSK-VKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            G   P   NV++EI K S+ VKYE+DK +G I VDRIL + + YP NYG++P TLC D D +DV++++  P++PG
Sbjct:    9 GNNLPEEINVIIEIPKDSEPVKYEVDKASGAIFVDRILSTPMRYPCNYGYVPNTLCGDGDPVDVMVVLPLPLVPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_METAC (Inorganic pyrophosphatase OS=Methanosarcina acetivorans GN=ppa PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.847e-14
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  256 NVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            +V++EI KGS+ KYE DK+  +IK DR+L+SS+VYP +YGF P TL  D D +D L+L  EP  PG
Sbjct:   11 SVLIEIPKGSRNKYEYDKEKKVIKFDRMLFSSMVYPCDYGFFPDTLALDGDPLDALVLTWEPTFPG 76          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_CAMJE (Inorganic pyrophosphatase OS=Campylobacter jejuni GN=ppa PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.847e-14
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 1
Query:  244 PTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            P   N V+EI  GS +KYE+DK +G I VDR++ S++ YP NYGFI  TL +D D +D+L+L   P+  G
Sbjct:   12 PNKINAVIEIPYGSNIKYEIDKDSGAIMVDRVMASAIFYPANYGFIANTLADDGDPVDILVLNEYPIQAG 81          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_MYCTU (Inorganic pyrophosphatase OS=Mycobacterium tuberculosis GN=ppa PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.412e-14
Identity = 33/67 (49.25%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  253 FNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            F+V +EI KG + KYE+D +TG +++DR LY+ + YP +YGFI  TL +D D +D L+L+ +PV PG
Sbjct:    3 FDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPG 69          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_MYCBO (Inorganic pyrophosphatase OS=Mycobacterium bovis GN=ppa PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.412e-14
Identity = 33/67 (49.25%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  253 FNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            F+V +EI KG + KYE+D +TG +++DR LY+ + YP +YGFI  TL +D D +D L+L+ +PV PG
Sbjct:    3 FDVTIEIPKGQRNKYEVDHETGRVRLDRYLYTPMAYPTDYGFIEDTLGDDGDPLDALVLLPQPVFPG 69          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_MYCGE (Inorganic pyrophosphatase OS=Mycoplasma genitalium GN=ppa PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.150e-14
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  250 IFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLP 450
            + +V+VEI K SK+KYE D++TG I+VDRIL+ S  YP NYGFI  TL  D D +D  I   +P LP
Sbjct:    5 LIDVIVEIPKNSKIKYEYDRQTGQIRVDRILFGSESYPQNYGFIKNTLDWDGDELDCFIFADQPFLP 71          
The following BLAST results are available for this feature:
BLAST of FC868602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
IPYR_CAUCR1.083e-1443.59Inorganic pyrophosphatase OS=Caulobacter crescentu... [more]
IPYR_BRAJA1.083e-1446.15Inorganic pyrophosphatase OS=Bradyrhizobium japoni... [more]
IPYR_GLUOX1.414e-1450.00Inorganic pyrophosphatase OS=Gluconobacter oxydans... [more]
IPYR_XYLFT1.847e-1449.33Inorganic pyrophosphatase OS=Xylella fastidiosa (s... [more]
IPYR_XYLFA1.847e-1449.33Inorganic pyrophosphatase OS=Xylella fastidiosa GN... [more]
IPYR_METAC1.847e-1454.55Inorganic pyrophosphatase OS=Methanosarcina acetiv... [more]
IPYR_CAMJE1.847e-1448.57Inorganic pyrophosphatase OS=Campylobacter jejuni ... [more]
IPYR_MYCTU2.412e-1449.25Inorganic pyrophosphatase OS=Mycobacterium tubercu... [more]
IPYR_MYCBO2.412e-1449.25Inorganic pyrophosphatase OS=Mycobacterium bovis G... [more]
IPYR_MYCGE3.150e-1453.73Inorganic pyrophosphatase OS=Mycoplasma genitalium... [more]

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Properties
Property NameValue
Genbank descriptionC31002E03EF AbioticL1 Citrus clementina cDNA clone C31002E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868602 ID=FC868602; Name=FC868602; organism=Citrus clementina; type=EST; length=453bp
GGTTCTGTGAAAGTGAAAGTTGACCAACCAGCAACCCTTCGATCTCTTGC
TAGTAGCTACATTTCCGTGTCTTCATCAACAATCAAAGAGATGAGTGAGG
AGGCGGCGCATGGAGATGGAAGTGAAGCTGTTGAAGCTCCACAGGGTTCA
GTTCCTCGGCTGAACGAGAGGATCCTCTCATCTATGTCGAGGAGATCAGT
TGCTGCACATCCTTGGCATGATCTTGAAATTGGACCTGGAGCTCCCACCA
TCTTCAATGTTGTTGTTGAGATATCAAAGGGAAGTAAGGTCAAATATGAA
CTTGACAAGAAAACAGGATTGATTAAGGTTGATCGAATTCTTTATTCCTC
TGTGGTCTATCCTCATAACTATGGTTTCATCCCTCGCACATTATGTGAAG
ATAATGATNCCATGGATGTCTTGATTCTTATGCACGAGCCAGTCCTTCCC
GGA
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