FC868602

Overview
NameFC868602
Unique NameFC868602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1558 contig Ccv1_Contig1558:32..484. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_HELPY (Inorganic pyrophosphatase OS=Helicobacter pylori GN=ppa PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.042e-13
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  223 LEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLIL 429
            LE+   A ++  VV+EISK S +KYELDK++G + VDR+LY +  YP NYGF+P TL  D D +D L+L
Sbjct:    6 LEVSHDADSLC-VVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVL 73          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_HELPJ (Inorganic pyrophosphatase OS=Helicobacter pylori J99 GN=ppa PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.042e-13
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  223 LEIGPGAPTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLIL 429
            LE+   A ++  VV+EISK S +KYELDK++G + VDR+LY +  YP NYGF+P TL  D D +D L+L
Sbjct:    6 LEVSHDADSLC-VVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVL 73          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR2_PSESM (Inorganic pyrophosphatase 2 OS=Pseudomonas syringae pv. tomato GN=ppa2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.042e-13
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  220 DLEIGPGAPTIFNVVVEI-SKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            D+  G   P  F  V+EI +  S +KYE+DK +G I VDR L + + YP NYGFIP TL +D D +DVL++   PV PG
Sbjct:    5 DIPAGNAIPDDFFTVIEIPANHSPIKYEVDKPSGQIFVDRFLSTPMFYPANYGFIPNTLSDDGDPLDVLVICPYPVSPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_RALSO (Inorganic pyrophosphatase OS=Ralstonia solanacearum GN=ppa PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.667e-13
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 1
Query:  214 WHDLEIGPGAPTIFNVVVEI-SKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            ++++  G   P  FNV++EI ++   VKYE DK+TGL+ VDR + + + YP NYGFIP+TL  D D +DVL++   P++ G
Sbjct:    3 FNNVSPGKDIPNDFNVIIEIPAQSDPVKYEADKETGLLHVDRFVGTGMRYPANYGFIPQTLAGDGDPVDVLVVTPFPLVHG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_UREPA (Inorganic pyrophosphatase OS=Ureaplasma parvum GN=ppa PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.549e-13
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  256 NVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            NV +EI K S +KYE D+ T  I VDRIL+ S+VYPHNYGF+   L  D D +DVL+   +   PG
Sbjct:    4 NVTIEIPKNSNIKYEYDRATKEIMVDRILHGSMVYPHNYGFLKEALDYDGDELDVLVFADQAFQPG 69          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_BACHD (Inorganic pyrophosphatase OS=Bacillus halodurans GN=ppa PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.549e-13
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  244 PTIFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            P +    +EI  GS+ KYE DK+ G+ K+DR+L+S + YP  YG+I  TL  D D +DVL+++  P  PG
Sbjct:    5 PKVIEAFIEIPTGSQNKYEYDKERGVFKLDRVLFSPMFYPAEYGYIENTLALDGDPLDVLVIVSNPTFPG 74          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_COREF (Inorganic pyrophosphatase OS=Corynebacterium efficiens GN=ppa PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.324e-12
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  259 VVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLP 450
            V VEI KGS+ KYE+D +TG + +DR L++ + YP +YGFI  TL ED D MD L+++ E V P
Sbjct:    5 VTVEIPKGSRNKYEIDHETGKVYLDRYLFTPMAYPLDYGFIDHTLGEDGDPMDALVILPESVFP 68          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_RHILO (Inorganic pyrophosphatase OS=Rhizobium loti GN=ppa PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.729e-12
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  232 GPGAPTIFNVVVEISKGSK-VKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            G   P   NV++E+  G + +KYE+DK+ G + VDR L++S+ YP NYGF+P TL  D D +DVL+     ++PG
Sbjct:    9 GKNPPEDVNVIIEVPIGGEPIKYEMDKEAGTLFVDRFLHTSMRYPGNYGFVPHTLSGDGDPIDVLVCNTRALVPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_BACST (Inorganic pyrophosphatase OS=Bacillus stearothermophilus GN=ppa PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.258e-12
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1
Query:  250 IFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            I    +EI  GS+ KYE DK+ G+ K+DR+LYS + YP  YG++  TL  D D +D+L++   P  PG
Sbjct:    7 IVEAFIEIPTGSQNKYEFDKERGIFKLDRVLYSPMFYPAEYGYLQNTLALDGDPLDILVITTNPTFPG 74          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_BACP3 (Inorganic pyrophosphatase OS=Bacillus PS3 GN=ppa PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.851e-12
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1
Query:  250 IFNVVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            I    +EI  GS+ KYE DK+ G+ K+DR+LYS + YP  YG++  TL  D D +D+L++   P  PG
Sbjct:    7 IVEAFIEIPTGSQNKYEFDKERGIFKLDRVLYSPMFYPAEYGYLQNTLALDGDPLDILVITTNPPFPG 74          
The following BLAST results are available for this feature:
BLAST of FC868602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
IPYR_HELPY2.042e-1352.17Inorganic pyrophosphatase OS=Helicobacter pylori G... [more]
IPYR_HELPJ2.042e-1352.17Inorganic pyrophosphatase OS=Helicobacter pylori J... [more]
IPYR2_PSESM2.042e-1348.10Inorganic pyrophosphatase 2 OS=Pseudomonas syringa... [more]
IPYR_RALSO2.667e-1344.44Inorganic pyrophosphatase OS=Ralstonia solanacearu... [more]
IPYR_UREPA4.549e-1351.52Inorganic pyrophosphatase OS=Ureaplasma parvum GN=... [more]
IPYR_BACHD4.549e-1344.29Inorganic pyrophosphatase OS=Bacillus halodurans G... [more]
IPYR_COREF1.324e-1251.56Inorganic pyrophosphatase OS=Corynebacterium effic... [more]
IPYR_RHILO1.729e-1244.00Inorganic pyrophosphatase OS=Rhizobium loti GN=ppa... [more]
IPYR_BACST2.258e-1244.12Inorganic pyrophosphatase OS=Bacillus stearothermo... [more]
IPYR_BACP33.851e-1244.12Inorganic pyrophosphatase OS=Bacillus PS3 GN=ppa P... [more]

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Properties
Property NameValue
Genbank descriptionC31002E03EF AbioticL1 Citrus clementina cDNA clone C31002E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868602 ID=FC868602; Name=FC868602; organism=Citrus clementina; type=EST; length=453bp
GGTTCTGTGAAAGTGAAAGTTGACCAACCAGCAACCCTTCGATCTCTTGC
TAGTAGCTACATTTCCGTGTCTTCATCAACAATCAAAGAGATGAGTGAGG
AGGCGGCGCATGGAGATGGAAGTGAAGCTGTTGAAGCTCCACAGGGTTCA
GTTCCTCGGCTGAACGAGAGGATCCTCTCATCTATGTCGAGGAGATCAGT
TGCTGCACATCCTTGGCATGATCTTGAAATTGGACCTGGAGCTCCCACCA
TCTTCAATGTTGTTGTTGAGATATCAAAGGGAAGTAAGGTCAAATATGAA
CTTGACAAGAAAACAGGATTGATTAAGGTTGATCGAATTCTTTATTCCTC
TGTGGTCTATCCTCATAACTATGGTTTCATCCCTCGCACATTATGTGAAG
ATAATGATNCCATGGATGTCTTGATTCTTATGCACGAGCCAGTCCTTCCC
GGA
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