FC868602

Overview
NameFC868602
Unique NameFC868602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_RHORT (Inorganic pyrophosphatase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=ppa PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.030e-12
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  223 LEIGPGAPTIFNVVVEISK-GSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            + +G   P   NV++EI      VKYE+DK++G + VDR L++++ YP NYGF+P TL +D D +DV+++   PV  G
Sbjct:    6 IPVGKNPPQDVNVIIEIPLLADPVKYEVDKESGAMFVDRFLHTAMHYPCNYGFVPHTLSDDGDPVDVMVVGRIPVAVG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_CORGL (Inorganic pyrophosphatase OS=Corynebacterium glutamicum GN=ppa PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.569e-12
Identity = 31/64 (48.44%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  259 VVVEISKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLP 450
            V VEI KGS+ KYE+D +TG + +DR L++ + YP +YG+I  TL ED D +D L+++ E V P
Sbjct:    5 VTVEIPKGSRNKYEIDHETGKVYLDRYLFTPMAYPLDYGYIDHTLGEDGDPLDALVILPESVFP 68          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_PSEAE (Inorganic pyrophosphatase OS=Pseudomonas aeruginosa GN=ppa PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.911e-11
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  232 GPGAPTIFNVVVEI-SKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            G   P    V +EI +  + +KYE+DK T  + VDR + + + YP NYGFIP TL +D D +DVL++   PV PG
Sbjct:    9 GKDLPNDIYVAIEIPANHAPIKYEIDKDTDCLFVDRFMATPMFYPANYGFIPNTLADDGDPLDVLVVTPYPVAPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR1_PSESM (Inorganic pyrophosphatase 1 OS=Pseudomonas syringae pv. tomato GN=ppa1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.911e-11
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  232 GPGAPTIFNVVVEI-SKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            G   P    V +EI +  + +KYE+DK T  + VDR + + + YP NYGFIP TL +D D +DVL++   PV PG
Sbjct:    9 GKDLPNDIYVAIEIPANHAPIKYEIDKDTDCLFVDRFMATPMFYPANYGFIPNTLADDGDPLDVLVVTPYPVTPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_PSEPK (Inorganic pyrophosphatase OS=Pseudomonas putida (strain KT2440) GN=ppa PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.561e-11
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:  232 GPGAPTIFNVVVEI-SKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPVLPG 453
            G   P    V +EI +  + +KYE+DK +  + VDR + + + YP NYGFIP TL +D D +DVL++   PV PG
Sbjct:    9 GKDLPNDIYVAIEIPANHAPIKYEIDKDSDTLFVDRFMATPMFYPANYGFIPNTLADDGDPLDVLVVTPYPVAPG 83          
BLAST of FC868602 vs. ExPASy Swiss-Prot
Match: IPYR_BUCAI (Inorganic pyrophosphatase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ppa PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.561e-11
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 1
Query:  232 GPGAPTIFNVVVEISKGSK-VKYELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCEDNDXMDVLILMHEPV 444
            G   P    V++EIS  S  +KYE+DKK+G++ VDR + + + YP NYG+I  TL  D D +DVL+  H P+
Sbjct:    9 GDDIPNDIYVIIEISSNSSPIKYEVDKKSGMLFVDRFIPTPMFYPCNYGYINHTLSLDGDPLDVLVPSHYPI 80          
The following BLAST results are available for this feature:
BLAST of FC868602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
IPYR_RHORT5.030e-1242.31Inorganic pyrophosphatase OS=Rhodospirillum rubrum... [more]
IPYR_CORGL6.569e-1248.44Inorganic pyrophosphatase OS=Corynebacterium gluta... [more]
IPYR_PSEAE1.911e-1144.00Inorganic pyrophosphatase OS=Pseudomonas aeruginos... [more]
IPYR1_PSESM1.911e-1144.00Inorganic pyrophosphatase 1 OS=Pseudomonas syringa... [more]
IPYR_PSEPK5.561e-1142.67Inorganic pyrophosphatase OS=Pseudomonas putida (s... [more]
IPYR_BUCAI5.561e-1144.44Inorganic pyrophosphatase OS=Buchnera aphidicola s... [more]

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Properties
Property NameValue
Genbank descriptionC31002E03EF AbioticL1 Citrus clementina cDNA clone C31002E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868602 ID=FC868602; Name=FC868602; organism=Citrus clementina; type=EST; length=453bp
GGTTCTGTGAAAGTGAAAGTTGACCAACCAGCAACCCTTCGATCTCTTGC
TAGTAGCTACATTTCCGTGTCTTCATCAACAATCAAAGAGATGAGTGAGG
AGGCGGCGCATGGAGATGGAAGTGAAGCTGTTGAAGCTCCACAGGGTTCA
GTTCCTCGGCTGAACGAGAGGATCCTCTCATCTATGTCGAGGAGATCAGT
TGCTGCACATCCTTGGCATGATCTTGAAATTGGACCTGGAGCTCCCACCA
TCTTCAATGTTGTTGTTGAGATATCAAAGGGAAGTAAGGTCAAATATGAA
CTTGACAAGAAAACAGGATTGATTAAGGTTGATCGAATTCTTTATTCCTC
TGTGGTCTATCCTCATAACTATGGTTTCATCCCTCGCACATTATGTGAAG
ATAATGATNCCATGGATGTCTTGATTCTTATGCACGAGCCAGTCCTTCCC
GGA
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