FC868615

Overview
NameFC868615
Unique NameFC868615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: SC61A_PAGBO (Protein transport protein Sec61 subunit alpha OS=Pagothenia borchgrevinki GN=sec61a PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 2.021e-59
Identity = 114/193 (59.07%), Postives = 138/193 (71.50%), Query Frame = 2 
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTT+N+G G EFEGA+IALFHLL T+ +KV ALREAFYRQNLPNI NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P   G         ++   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNILNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSG 384
[Close]
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: SC61A_NOTAN (Protein transport protein Sec61 subunit alpha OS=Notothenia angustata GN=sec61a PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 2.021e-59
Identity = 114/193 (59.07%), Postives = 138/193 (71.50%), Query Frame = 2 
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTT+N+G G EFEGA+IALFHLL T+ +KV ALREAFYRQNLPNI NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P   G         ++   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNILNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSG 384
[Close]
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: SC61A_HARAN (Protein transport protein Sec61 subunit alpha OS=Harpagifer antarcticus GN=sec61a PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 2.021e-59
Identity = 114/193 (59.07%), Postives = 138/193 (71.50%), Query Frame = 2 
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTT+N+G G EFEGA+IALFHLL T+ +KV ALREAFYRQNLPNI NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P   G         ++   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNILNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSG 384
[Close]
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: SC61A_DISMA (Protein transport protein Sec61 subunit alpha OS=Dissostichus mawsoni GN=sec61a PE=2 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 2.021e-59
Identity = 114/193 (59.07%), Postives = 138/193 (71.50%), Query Frame = 2 
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTT+N+G G EFEGA+IALFHLL T+ +KV ALREAFYRQNLPNI NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P   G         ++   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNILNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSG 384
[Close]
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: S61A2_PONAB (Protein transport protein Sec61 subunit alpha isoform 2 OS=Pongo abelii GN=SEC61A2 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.880e-59
Identity = 117/193 (60.62%), Postives = 139/193 (72.02%), Query Frame = 2 
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKA SPTTIN+G G EFEGAVIALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ  +YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG+W +    G   S PVGGL YY++ P  +G          V   F       F +TWIEV G
Sbjct:  192 VWKASSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAILEDPVHVVVYIIFMLGSCAFFSKTWIEVSG 384
[Close]
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: SC61A_BOVVA (Protein transport protein Sec61 subunit alpha OS=Bovichtus variegatus GN=sec61a PE=2 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 7.679e-59
Identity = 113/193 (58.55%), Postives = 137/193 (70.98%), Query Frame = 2 
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAF PTT+N+G G EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++  SG   + PV GL YY++ P   G          +   F       F +TWIEV G
Sbjct:  192 VWKAFGPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATTSGPARAYPVAGLCYYLSPPESFGSVLDDPVHAVIYIVFMLGSCAFFSKTWIEVSG 384
[Close]
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: SC61A_HEMAM (Protein transport protein Sec61 subunit alpha OS=Hemitripterus americanus GN=sec61a PE=2 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 1.310e-58
Identity = 112/193 (58.03%), Postives = 136/193 (70.47%), Query Frame = 2 
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTT+N+G G EFEGA+IALFHLL T+ +KV ALRE FYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P   G          +   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREGFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAGIYIVFMLGSCAFFSKTWIEVSG 384
[Close]
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: S61A1_RAT (Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus norvegicus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 2.918e-58
Identity = 112/193 (58.03%), Postives = 137/193 (70.98%), Query Frame = 2 
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTT+N+G G EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL YY++ P   G          V   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSG 384
[Close]
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: S61A1_PONAB (Protein transport protein Sec61 subunit alpha isoform 1 OS=Pongo abelii GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 2.918e-58
Identity = 112/193 (58.03%), Postives = 137/193 (70.98%), Query Frame = 2 
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTT+N+G G EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL YY++ P   G          V   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSG 384
[Close]
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: S61A1_MOUSE (Protein transport protein Sec61 subunit alpha isoform 1 OS=Mus musculus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 2.918e-58
Identity = 112/193 (58.03%), Postives = 137/193 (70.98%), Query Frame = 2 
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTT+N+G G EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL YY++ P   G          V   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSG 384
The following BLAST results are available for this feature:
BLAST of FC868615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
SC61A_PAGBO2.021e-5959.07Protein transport protein Sec61 subunit alpha OS=P... [more]
SC61A_NOTAN2.021e-5959.07Protein transport protein Sec61 subunit alpha OS=N... [more]
SC61A_HARAN2.021e-5959.07Protein transport protein Sec61 subunit alpha OS=H... [more]
SC61A_DISMA2.021e-5959.07Protein transport protein Sec61 subunit alpha OS=D... [more]
S61A2_PONAB5.880e-5960.62Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_BOVVA7.679e-5958.55Protein transport protein Sec61 subunit alpha OS=B... [more]
SC61A_HEMAM1.310e-5858.03Protein transport protein Sec61 subunit alpha OS=H... [more]
S61A1_RAT2.918e-5858.03Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_PONAB2.918e-5858.03Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_MOUSE2.918e-5858.03Protein transport protein Sec61 subunit alpha isof... [more]

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Properties
Property NameValue
Genbank descriptionC31002F10EF AbioticL1 Citrus clementina cDNA clone C31002F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868615 ID=FC868615; Name=FC868615; organism=Citrus clementina; type=EST; length=587bp
TATTTGGAAAGCTTTTAGCCCCACAACCATAAACAGTGGCCCCGGAGCTG
AATTCGAGGGTGCTGTTATTGCTCTGTTTCATCTGCTGATAACCAAGCAA
AACAAAGTTGGGGCTCTTCGAGAGGCTTTCTATCGGCAAAACCTTCCCAA
TATTACTAATTTGCTTGCTACAGTCCTCGTATTCCTTATTGTTGTCTACT
TTCAAGGTTTCAAAGTGGTGTTGCCCGTGAGATCAAAAAATGCCCGTGGG
CAACAGGGTGCTTATCCAATTAAGCTATTCTACACATCCAACATGCCTAT
CATTCTCCAATCTGCACTTGTCTCAAATCTGTATTTCATCTCTCAGTTGC
TCTACAGGAAGTACAGTGGCAATTTCTTTGTTAATCTGTTAGGGAAGTGG
AAGGAATCTGAATATTCTGGCCACTCTATTCCAGTTGGTGGCCTAGCTTA
TTATGTCACTGCACCCAGCAAGCTTGGCTGATATGGCAGCCAATCCTTTC
CATGCTCTGTTCTACCTGGTTTTTATGCTTACTGCTTGTGCTCTTTTCTC
GAAACTTGGATTGAAGTTCCGGGTCTTCTGCCCGGGA
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