FC868615

Overview
NameFC868615
Unique NameFC868615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: SECY_PYRHO (Preprotein translocase subunit secY OS=Pyrococcus horikoshii GN=secY PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.971e-11
Identity = 44/123 (35.77%), Postives = 70/123 (56.91%), Query Frame = 2 
Query:  110 GALREAFYRQ-NLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPSKL 475
            G L+ A YR  + P++  + AT++VFL+VVYF+  +V +P+  +     +G YPIK  Y SN+PIIL  AL +N+   +++L R     F    LG++     +G+  P+GG   YV  P  +
Sbjct:  226 GDLKGALYRGGSAPDMIAVTATIIVFLVVVYFESMRVEIPLGYRGVT-IRGRYPIKFLYVSNIPIILTFALYANIQLWARVLDR-----FGHPWLGRF--DPVTGN--PIGGFVLYVIPPRNI 338

HSP 2 Score: 21.1718 bits (43), Expect = 6.971e-11
Identity = 9/31 (29.03%), Postives = 15/31 (48.39%), Query Frame = 3 
Query:  465 PASLADMAANPFHALFYLVFMLTACALFSKL 557
            P ++  +  NP  A+ YL+  +    LF  L
Sbjct:  335 PRNIFTVIDNPVRAIIYLILTIIFSLLFGFL 365
The following BLAST results are available for this feature:
BLAST of FC868615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
SECY_PYRHO6.971e-1135.77Preprotein translocase subunit secY OS=Pyrococcus ... [more]

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Properties
Property NameValue
Genbank descriptionC31002F10EF AbioticL1 Citrus clementina cDNA clone C31002F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868615 ID=FC868615; Name=FC868615; organism=Citrus clementina; type=EST; length=587bp
TATTTGGAAAGCTTTTAGCCCCACAACCATAAACAGTGGCCCCGGAGCTG
AATTCGAGGGTGCTGTTATTGCTCTGTTTCATCTGCTGATAACCAAGCAA
AACAAAGTTGGGGCTCTTCGAGAGGCTTTCTATCGGCAAAACCTTCCCAA
TATTACTAATTTGCTTGCTACAGTCCTCGTATTCCTTATTGTTGTCTACT
TTCAAGGTTTCAAAGTGGTGTTGCCCGTGAGATCAAAAAATGCCCGTGGG
CAACAGGGTGCTTATCCAATTAAGCTATTCTACACATCCAACATGCCTAT
CATTCTCCAATCTGCACTTGTCTCAAATCTGTATTTCATCTCTCAGTTGC
TCTACAGGAAGTACAGTGGCAATTTCTTTGTTAATCTGTTAGGGAAGTGG
AAGGAATCTGAATATTCTGGCCACTCTATTCCAGTTGGTGGCCTAGCTTA
TTATGTCACTGCACCCAGCAAGCTTGGCTGATATGGCAGCCAATCCTTTC
CATGCTCTGTTCTACCTGGTTTTTATGCTTACTGCTTGTGCTCTTTTCTC
GAAACTTGGATTGAAGTTCCGGGTCTTCTGCCCGGGA
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