FC868617

Overview
NameFC868617
Unique NameFC868617
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868617 vs. ExPASy Swiss-Prot
Match: HTPG_BURMS (Chaperone protein htpG OS=Burkholderia mallei (strain SAVP1) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 68/197 (34.52%), Postives = 109/197 (55.33%), Query Frame = 3
Query:    6 KQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELG---DEDEVKERETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALISSGFTPDSPA 587
            +Q  IYY+  D+ ++AK++P LE   +K +EVL L + +DE  +  L  F+ K    +++ DL+LG   D+++  + ET +    + D +K+ LG+KV  V+V+ RL+ SP  LV+     S  ++R++KA      S       + ILEINP+HP+VK L A      D  D      LL+D AL++ G   + PA
Sbjct:  433 EQTKIYYVTADTWQAAKNSPHLEVFRKKGVEVLLLTDRVDEWMLSFLHEFDGKPLASVARGDLDLGALNDDEKKAQEETGEAMKPVVDKMKETLGEKVKDVRVTFRLTDSPSCLVADDNDMSGYLQRMLKAAGQSAPSF------QPILEINPEHPLVKALKA------DGADFGDWCHLLFDQALLAEGGALEDPA 617          
BLAST of FC868617 vs. ExPASy Swiss-Prot
Match: HTPG_BURMA (Chaperone protein htpG OS=Burkholderia mallei GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 68/197 (34.52%), Postives = 109/197 (55.33%), Query Frame = 3
Query:    6 KQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELG---DEDEVKERETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALISSGFTPDSPA 587
            +Q  IYY+  D+ ++AK++P LE   +K +EVL L + +DE  +  L  F+ K    +++ DL+LG   D+++  + ET +    + D +K+ LG+KV  V+V+ RL+ SP  LV+     S  ++R++KA      S       + ILEINP+HP+VK L A      D  D      LL+D AL++ G   + PA
Sbjct:  433 EQTKIYYVTADTWQAAKNSPHLEVFRKKGVEVLLLTDRVDEWMLSFLHEFDGKPLASVARGDLDLGALNDDEKKAQEETGEAMKPVVDKMKETLGEKVKDVRVTFRLTDSPSCLVADDNDMSGYLQRMLKAAGQSAPSF------QPILEINPEHPLVKALKA------DGADFGDWCHLLFDQALLAEGGALEDPA 617          
BLAST of FC868617 vs. ExPASy Swiss-Prot
Match: HTPG_BURM9 (Chaperone protein htpG OS=Burkholderia mallei (strain NCTC 10229) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 68/197 (34.52%), Postives = 109/197 (55.33%), Query Frame = 3
Query:    6 KQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELG---DEDEVKERETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALISSGFTPDSPA 587
            +Q  IYY+  D+ ++AK++P LE   +K +EVL L + +DE  +  L  F+ K    +++ DL+LG   D+++  + ET +    + D +K+ LG+KV  V+V+ RL+ SP  LV+     S  ++R++KA      S       + ILEINP+HP+VK L A      D  D      LL+D AL++ G   + PA
Sbjct:  433 EQTKIYYVTADTWQAAKNSPHLEVFRKKGVEVLLLTDRVDEWMLSFLHEFDGKPLASVARGDLDLGALNDDEKKAQEETGEAMKPVVDKMKETLGEKVKDVRVTFRLTDSPSCLVADDNDMSGYLQRMLKAAGQSAPSF------QPILEINPEHPLVKALKA------DGADFGDWCHLLFDQALLAEGGALEDPA 617          
BLAST of FC868617 vs. ExPASy Swiss-Prot
Match: HTPG_BURM7 (Chaperone protein htpG OS=Burkholderia mallei (strain NCTC 10247) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 68/197 (34.52%), Postives = 109/197 (55.33%), Query Frame = 3
Query:    6 KQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELG---DEDEVKERETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALISSGFTPDSPA 587
            +Q  IYY+  D+ ++AK++P LE   +K +EVL L + +DE  +  L  F+ K    +++ DL+LG   D+++  + ET +    + D +K+ LG+KV  V+V+ RL+ SP  LV+     S  ++R++KA      S       + ILEINP+HP+VK L A      D  D      LL+D AL++ G   + PA
Sbjct:  433 EQTKIYYVTADTWQAAKNSPHLEVFRKKGVEVLLLTDRVDEWMLSFLHEFDGKPLASVARGDLDLGALNDDEKKAQEETGEAMKPVVDKMKETLGEKVKDVRVTFRLTDSPSCLVADDNDMSGYLQRMLKAAGQSAPSF------QPILEINPEHPLVKALKA------DGADFGDWCHLLFDQALLAEGGALEDPA 617          
BLAST of FC868617 vs. ExPASy Swiss-Prot
Match: HTPG_SHELP (Chaperone protein htpG OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 62/164 (37.80%), Postives = 101/164 (61.59%), Query Frame = 3
Query:    3 EKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELGDEDEVKERETKQEFNL----LCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLN 482
            E Q+ IYY+  DS ++A ++P LE L +K IEVL + E IDE  I +L  F+ K+   +++ DLELG+ ++  E+E +++       L   +K+ LGDKVA+V+V+ RL+ +P  +V+G    S+ M +LM+A     T S      + + E+NP+HP+VK L+
Sbjct:  436 EGQSKIYYIVADSHEAAANSPHLELLRKKGIEVLLMSERIDEWLINHLSEFDGKQLHSVTRGDLELGELEDAAEKEAQEKLETESEGLVKRVKEVLGDKVAEVKVTSRLTDTPACVVAGAGEMSSQMIKLMQAAGQAVTES------KPVFELNPEHPLVKRLD 593          
BLAST of FC868617 vs. ExPASy Swiss-Prot
Match: HTPG_METCA (Chaperone protein htpG OS=Methylococcus capsulatus GN=htpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 70/213 (32.86%), Postives = 114/213 (53.52%), Query Frame = 3
Query:    3 EKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLEL----GDEDEVKERETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALISSGFTPDSPADLGNKIYEMMAMAL 629
            E Q+ IY+++ +S  +A+++P LE   +KDIEVL L + IDE  +  L  +  K    +++ DL+L    G+E++ +    K+ F  L + +K+ L  KV  V++S RL+ SP  L+S  +G S  MER+MK+       S      + ILEINP H ++  LN       D T  +    LL D A+++ G   D PA+  +K+  ++   L
Sbjct:  432 EGQDKIYFVSAESFGAARNSPHLEIFRKKDIEVLLLSDRIDEWLVSYLTEYEGKPLQSVARGDLDLGKLEGEEEKAEAAAEKEAFAPLTERLKKALEAKVNDVRLSHRLTDSPACLISESYGMSRTMERIMKSAGQNIPGS------KPILEINPHHGLIARLNTEA----DQTRFQDLASLLLDQAVLAEGGQLDDPAEFVHKLNGLLQSLL 634          
BLAST of FC868617 vs. ExPASy Swiss-Prot
Match: HTPG_MARAV (Chaperone protein htpG OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 69/192 (35.94%), Postives = 108/192 (56.25%), Query Frame = 3
Query:    3 EKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELG----DEDEVKERETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALISSG 566
            E QN IYY+  D+  +AKS+P LE   +K IEVL L + IDE  +  L  ++ K+F D+++ DL+LG    +ED+  + E  +E   L + IK  L D+V +V+V+ RL+ SP  LV G+F   A M+++M+A      +  +    + I EIN DHP+V+ L    +        K    +L+D A ++SG
Sbjct:  427 EGQNKIYYITGDNFAAAKSSPHLEVFRKKGIEVLILSDRIDEWMMGYLSEYDGKQFQDVARGDLDLGEVETEEDKKHQEEAAKEHKDLLERIKTALEDQVQEVRVTNRLTDSPACLVVGQFDMGAQMKKIMEA------AGQKVPESKPIFEINVDHPLVQRL----ETEQGEQRFKELSAVLFDQATLASG 608          
BLAST of FC868617 vs. ExPASy Swiss-Prot
Match: HTPG_BURP0 (Chaperone protein htpG OS=Burkholderia pseudomallei (strain 1106a) GN=htpG PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.102e-23
Identity = 67/197 (34.01%), Postives = 109/197 (55.33%), Query Frame = 3
Query:    6 KQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELG---DEDEVKERETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALISSGFTPDSPA 587
            +Q  +YY+  D+ ++AK++P LE   +K +EVL L + +DE  +  L  F+ K    +++ DL+LG   D+++  + ET +    + D +K+ LG+KV  V+V+ RL+ SP  LV+     S  ++R++KA      S       + ILEINP+HP+VK L A      D  D      LL+D AL++ G   + PA
Sbjct:  433 EQTKLYYVTADTWQAAKNSPHLEVFRKKGVEVLLLTDRVDEWMLSFLHEFDGKPLASVARGDLDLGALNDDEKKAQEETGEAMKPVVDKMKETLGEKVKDVRVTFRLTDSPSCLVADDNDMSGYLQRMLKAAGQSAPSF------QPILEINPEHPLVKALKA------DGADFGDWCHLLFDQALLAEGGALEDPA 617          
BLAST of FC868617 vs. ExPASy Swiss-Prot
Match: HTPG_ROSDO (Chaperone protein htpG OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 75/218 (34.40%), Postives = 113/218 (51.83%), Query Frame = 3
Query:    3 EKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISK--EDLELGDE----DEVKERETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQA-LGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDA--KRAVDLLYDTALISSGFTPDSPADLGNKIYEMMAMAL 629
            E Q+AIYY+A D  +    +P LE    KD+EVL L + +DE  +Q++  F  K F  I++   DL+  +E    D+ +E     + N L   +K +LG  V  V+ SKRL+ SP  L++ +     N+ER++K    L D          R+LE+NPDH I+  L    K +  ++D   K A  LL D A I+ G TP  PA+   ++  +M  AL
Sbjct:  411 EGQDAIYYIAGDDARKIAQSPHLEGFRAKDVEVLLLSDHVDEFWLQHITEFEGKPFKSITRGAADLDKINEGEKADDAEEEAQAPDLNDLIAALKLELGASVKDVRPSKRLTDSPVCLIADEGDIDVNLERMLKRHGQLQDAMP-------RVLELNPDHRIITKLAERAKGSAAASDTLLKDAAHLLLDQARIADGETPADPAEFVRRLGSVMDSAL 621          
BLAST of FC868617 vs. ExPASy Swiss-Prot
Match: HTPG_BURTA (Chaperone protein htpG OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=htpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 68/197 (34.52%), Postives = 108/197 (54.82%), Query Frame = 3
Query:    6 KQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVLYLIEPIDEVAIQNLQTFNEKKFVDISKEDLELG---DEDEVKERETKQEFNLLCDWIKQQLGDKVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRILEINPDHPIVKDLNAACKNAPDSTDAKRAVDLLYDTALISSGFTPDSPA 587
            +Q  IYY+  D+ ++AK++P LE   +K +EVL L + +DE  +  L  F+ K    +++ DL+LG   D+++  + ET +    + D +K+ LG KV  V+V+ RL+ SP  LV+     S  ++R++KA      S       + ILEINP+HP+VK L A      D  D      LL+D AL++ G   + PA
Sbjct:  433 EQTKIYYVTADTWQAAKNSPHLEVFRKKGVEVLLLTDRVDEWMLSFLHEFDGKPLASVARGDLDLGALNDDEKKAQEETGEAMKPVVDKMKETLGGKVKDVRVTFRLTDSPSCLVADDNDMSGYLQRMLKAAGQNAPSF------QPILEINPEHPLVKALKA------DGADFGDWCHLLFDQALLAEGGALEDPA 617          
The following BLAST results are available for this feature:
BLAST of FC868617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
HTPG_BURMS2.405e-2334.52Chaperone protein htpG OS=Burkholderia mallei (str... [more]
HTPG_BURMA2.405e-2334.52Chaperone protein htpG OS=Burkholderia mallei GN=h... [more]
HTPG_BURM92.405e-2334.52Chaperone protein htpG OS=Burkholderia mallei (str... [more]
HTPG_BURM72.405e-2334.52Chaperone protein htpG OS=Burkholderia mallei (str... [more]
HTPG_SHELP3.141e-2337.80Chaperone protein htpG OS=Shewanella loihica (stra... [more]
HTPG_METCA3.141e-2332.86Chaperone protein htpG OS=Methylococcus capsulatus... [more]
HTPG_MARAV3.141e-2335.94Chaperone protein htpG OS=Marinobacter aquaeolei (... [more]
HTPG_BURP04.102e-2334.01Chaperone protein htpG OS=Burkholderia pseudomalle... [more]
HTPG_ROSDO5.357e-2334.40Chaperone protein htpG OS=Roseobacter denitrifican... [more]
HTPG_BURTA5.357e-2334.52Chaperone protein htpG OS=Burkholderia thailandens... [more]

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Properties
Property NameValue
Genbank descriptionC31002F12EF AbioticL1 Citrus clementina cDNA clone C31002F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868617 ID=FC868617; Name=FC868617; organism=Citrus clementina; type=EST; length=683bp
GTGAGAAGCAAAATGCTATCTATTACTTGGCGACAGACAGCTTGAAAAGT
GCAAAGAGTGCTCCGTTTTTAGAGAAGTTAGTTCAAAAAGATATTGAGGT
TCTTTATTTAATTGAGCCCATTGATGAAGTTGCCATCCAGAACCTGCAGA
CTTTCAATGAAAAGAAATTTGTTGACATCAGCAAGGAAGATCTAGAACTT
GGTGATGAGGATGAGGTAAAAGAAAGGGAAACTAAACAAGAATTTAATCT
TCTGTGTGATTGGATAAAGCAACAACTTGGTGACAAGGTGGCAAAGGTCC
AAGTTTCAAAGCGTCTAAGCTCATCTCCCTGTGTACTTGTTTCTGGCAAG
TTTGGATGGTCTGCTAATATGGAAAGGTTAATGAAGGCACAAGCTCTGGG
TGATACTTCAAGTTTGGAGTTTATGAGGGGAAGGAGAATATTGGAGATTA
ATCCAGATCATCCCATTGTTAAAGACTTGAATGCTGCTTGCAAGAATGCC
CCTGATAGCACTGATGCTAAGAGGGCTGTTGACCTGTTGTATGACACAGC
ATTGATCTCCAGTGGATTCACTCCTGACAGCCCAGCTGACTTGGGTAACA
AGATTTATGAGATGATGGCAATGGCTCTTGGAGGGAGATGGGGTAGATCA
GATGGGGACGAGGCAGAGTCAGTGGAAGGAATG
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