FC868618

Overview
NameFC868618
Unique NameFC868618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_STAEQ (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ahpC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  371 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            EF  V   D+ G   V+ F YP DF+FVCPTE+    ++YA+ ++L   +  VSTD+ F H AW      S  +  L+Y +I D +++I++++ +L  + G+A
Sbjct:   22 EFKEVTQEDFKGSWNVVCF-YPADFSFVCPTELEDLQNQYAKLQELGVNVYSVSTDTHFVHKAW---HDHSDAISKLEYSMIGDPSQTITRNFDVLDEETGLA 120          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX6_CHICK (Peroxiredoxin-6 OS=Gallus gallus GN=PRDX6 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 41/120 (34.17%), Postives = 65/120 (54.17%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGG---LGDLKYPLIADITKSISKSYGILIPDQ 670
            L+G+ AP+F A+         ++  D++G  + ILF +P DFT VC TE+   +    EF K N +++ +S DSV  HLAW        G   +  L +P+IAD  + ++   G+L PD+
Sbjct:    5 LLGDEAPNFEADTTQG----GIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFSKRNVKMIALSIDSVPDHLAWSKDINAYNGDQPVEKLPFPIIADKDRELAVKLGMLDPDE 120          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: REHY_MAIZE (1-Cys peroxiredoxin PER1 OS=Zea mays GN=PER1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 37/124 (29.84%), Postives = 63/124 (50.81%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGG--------LGDLKYPLIADITKSISKSYGILIPDQ 670
            +G+T P+   ++   +    +++ DY+G  Y I+F +P DFT VC TE+ A +    EFEK   ++LG+S D V SH  W       GG           + +P++AD  +   +   ++ PD+
Sbjct:    6 IGDTVPNLELDSTHGK----IRIHDYVGDGYAIIFSHPADFTPVCTTEMAAMAGYAKEFEKRGVKLLGISCDDVESHRQWTKDVEAYGGKQQQQQATTTKVTFPILADPARDAIRQLNMVDPDE 125          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: REHY_ARATH (1-Cys peroxiredoxin PER1 OS=Arabidopsis thaliana GN=PER1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 39/114 (34.21%), Postives = 57/114 (50.00%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIP 664
            +G+T P+   E   D+     KL DY    + +LF +P DFT VC TE+ A +    EF+K   ++LG+S D V SH  W+           + YP+IAD  K I     ++ P
Sbjct:    6 LGDTVPNLEVETTHDK----FKLHDYFANSWTVLFSHPGDFTPVCTTELGAMAKYAHEFDKRGVKLLGLSCDDVQSHKDWIKDIEAFNHGSKVNYPIIADPNKEIIPQLNMIDP 115          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TSA_ONCVO (Putative peroxiredoxin OS=Onchocerca volvulus GN=TSA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 47/124 (37.90%), Postives = 66/124 (53.23%), Query Frame = 2
Query:  326 GNTAPDFAAEAVFDQEFINVKLSDYIGK-KYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPT-----DRKSGGLGD---LKYPLIADITKSISKSYGILIPDQ 670
            GN  PDF AE   ++ FI+    D+IGK  + ILF +P DFT VC TE+        EF+K N +++G+S DS  SH  W          K  G      L YP+IAD  +S++   G++ PD+
Sbjct:    8 GNKFPDFQAET--NEGFIS-SFYDWIGKDSWAILFSHPRDFTPVCTTELARLVQLAPEFKKRNVKLIGLSCDSADSHSKWADDILALYKMKCVGCDSEKKLPYPIIADEDRSLATELGMMDPDE 128          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH_TREDE (Probable peroxiredoxin OS=Treponema denticola GN=TDE_0011 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQG 673
            PL+G+  P  A           +KL   +   + +LF +P DFT VC TE  AF     EFEKL  +++G+S D + SHL W+   ++  G+ ++ +P+IA    SI+   G+L P +G
Sbjct:    2 PLLGDDFPQLAVSTTHGP----MKLPCDLKGSWFVLFSHPADFTPVCTTEFVAFQKLMPEFEKLGVKLIGLSIDQIQSHLKWIEWIKEKLGV-EITFPVIA-ANDSIANQIGLLHPGKG 114          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH_METTM (Probable peroxiredoxin OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 38/116 (32.76%), Postives = 66/116 (56.90%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIP 664
            PL+G+  P+   +         +KL      ++ ILF +P DFT VC TE  AF + Y E  +L+ E++G+S D VFSH+ W+    ++    ++++P+IAD T  ++ + G++ P
Sbjct:    2 PLIGDKFPEMEVQTTHGL----MKLPAEFKGRWFILFSHPADFTPVCTTEFVAFQEVYPELRELDCELVGLSVDQVFSHIKWIEWIEENLDT-EIEFPVIAD-TGRVADTLGLIHP 111          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_STAAW (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain MW2) GN=ahpC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLA 120          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_STAAS (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain MSSA476) GN=ahpC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLA 120          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_STAAR (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain MRSA252) GN=ahpC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLA 120          
The following BLAST results are available for this feature:
BLAST of FC868618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
AHPC_STAEQ1.893e-1235.92Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
PRDX6_CHICK3.229e-1234.17Peroxiredoxin-6 OS=Gallus gallus GN=PRDX6 PE=2 SV=... [more]
REHY_MAIZE4.217e-1229.841-Cys peroxiredoxin PER1 OS=Zea mays GN=PER1 PE=2 ... [more]
REHY_ARATH4.217e-1234.211-Cys peroxiredoxin PER1 OS=Arabidopsis thaliana G... [more]
TSA_ONCVO5.508e-1237.90Putative peroxiredoxin OS=Onchocerca volvulus GN=T... [more]
TDXH_TREDE9.395e-1234.45Probable peroxiredoxin OS=Treponema denticola GN=T... [more]
TDXH_METTM1.227e-1132.76Probable peroxiredoxin OS=Methanobacterium thermoa... [more]
AHPC_STAAW1.227e-1133.33Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAS1.227e-1133.33Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAR1.227e-1133.33Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionC31002G01EF AbioticL1 Citrus clementina cDNA clone C31002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868618 ID=FC868618; Name=FC868618; organism=Citrus clementina; type=EST; length=679bp
GGATGATTTTGAGCAACAGATATCCACACTTTGTTTTCGCCCCGTTCGTT
GACTCCAGCTGAACAAGAATACAACAACAAAAACAATGGCTTGCTCAGCT
GCTTCTGCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAA
GGCTTTCTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCC
GCTCCTTCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCC
GTTTCTCTTTCCCGCAGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGC
ATCCGTTGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTG
CAGAGGCTGTTTTCGATCAAGAGTTTATCAATGTCAAGCTTTCGGATTAC
ATTGGGAAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATT
TGTTTGCCCCACAGAAATCACTGCTTTCAGTGACCGATATGCTGAATTTG
AGAAGCTAAACACAGAGATATTGGGTGTCTCAACTGACAGTGTGTTTTCA
CACTTGGCATGGGTCCCAACAGACAGAAAGTCAGGTGGTCTTGGTGATTT
GAAGTACCCACTAATTGCTGATATCACCAAATCAATTTCAAAATCCTATG
GTATTCTGATCCCTGATCAGGGAATTGCA
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