FC868618

Overview
NameFC868618
Unique NameFC868618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_STAAN (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain N315) GN=ahpC PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLA 120          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_STAAM (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ahpC PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLA 120          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_STAAC (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain COL) GN=ahpC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLA 120          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_STAAB (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ahpC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLA 120          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_STAA8 (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain NCTC 8325) GN=ahpC PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLA 120          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_STAA3 (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus aureus (strain USA300) GN=ahpC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 41/123 (33.33%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFD---QEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            L+      F A+A FD    +F  V   D  G  + ++ FYP DF+FVCPTE+    ++Y E +KL   +  VSTD+ F H AW      S  +  + Y +I D +++I++++ +L    G+A
Sbjct:    3 LINKEILPFTAQA-FDPKKDQFKEVTQEDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAW---HDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLA 120          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH_PYRAB (Probable peroxiredoxin OS=Pyrococcus abyssi GN=PYRAB10420 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 35/94 (37.23%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  383 VKLSDYIGK--KYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGIL 658
            +KL D+  K  K+ ILF +P DFT VC TE      R  EF KL  E +G+S D VF+H+ W+   +++ G+ ++++P+IAD    +++  G++
Sbjct:   20 IKLPDHFTKQGKWFILFSHPADFTPVCTTEFYGMQKRLEEFRKLGVEPIGLSVDQVFAHIKWMEWIKENLGV-EIEFPIIADDRGELAEKLGMI 112          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH_PYRHO (Probable peroxiredoxin OS=Pyrococcus horikoshii GN=PH1217 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  383 VKLSDYIGK--KYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGIL 658
            +KL DY  K  K+ ILF +P DFT VC TE      R  EF KL  E +G+S D VFSH+ W+   + +  + ++ +P+IAD    +++  G++
Sbjct:   20 IKLPDYFTKQGKWFILFSHPADFTPVCTTEFYGMQKRVEEFRKLGVEPIGLSVDQVFSHIKWIEWIKDNLSV-EIDFPVIADDRGELAEKLGMI 112          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH_CHLTE (Probable peroxiredoxin OS=Chlorobium tepidum GN=CT1747 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 39/119 (32.77%), Postives = 63/119 (52.94%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQG 673
            PL+G+  P+   +       I   L       + +LF +P DFT VC TE  AF  R   FEK+  +++G+S D VFSH+ WV   +++  + D+ +P++A     I+   G+L P +G
Sbjct:    2 PLLGDDFPELKVQTTHGPMNIPGDLKG----SWFVLFSHPADFTPVCTTEFVAFQQRVEAFEKIGCKLIGMSVDQVFSHIKWVEWIKENLDV-DITFPIVA-ANDRIANKLGMLHPGKG 114          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_STAHJ (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ahpC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 34/103 (33.01%), Postives = 59/103 (57.28%), Query Frame = 2
Query:  371 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            EF  V   D  G  + ++ FYP DF+FVCPTE+    ++Y + + L   +  VSTD+ F H AW      S  +  ++Y +I D +++I++++ +L  + G+A
Sbjct:   22 EFKEVSQDDLKGS-WSVVCFYPADFSFVCPTELEDLQNQYDKLQDLGVNVFSVSTDTHFVHKAW---HDHSDAISKIQYQMIGDPSQTITRNFDVLDEEAGLA 120          
The following BLAST results are available for this feature:
BLAST of FC868618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
AHPC_STAAN1.227e-1133.33Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAM1.227e-1133.33Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAC1.227e-1133.33Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAAB1.227e-1133.33Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAA81.227e-1133.33Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
AHPC_STAA31.227e-1133.33Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
TDXH_PYRAB1.603e-1137.23Probable peroxiredoxin OS=Pyrococcus abyssi GN=PYR... [more]
TDXH_PYRHO2.093e-1138.30Probable peroxiredoxin OS=Pyrococcus horikoshii GN... [more]
TDXH_CHLTE3.570e-1132.77Probable peroxiredoxin OS=Chlorobium tepidum GN=CT... [more]
AHPC_STAHJ3.570e-1133.01Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionC31002G01EF AbioticL1 Citrus clementina cDNA clone C31002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868618 ID=FC868618; Name=FC868618; organism=Citrus clementina; type=EST; length=679bp
GGATGATTTTGAGCAACAGATATCCACACTTTGTTTTCGCCCCGTTCGTT
GACTCCAGCTGAACAAGAATACAACAACAAAAACAATGGCTTGCTCAGCT
GCTTCTGCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAA
GGCTTTCTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCC
GCTCCTTCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCC
GTTTCTCTTTCCCGCAGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGC
ATCCGTTGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTG
CAGAGGCTGTTTTCGATCAAGAGTTTATCAATGTCAAGCTTTCGGATTAC
ATTGGGAAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATT
TGTTTGCCCCACAGAAATCACTGCTTTCAGTGACCGATATGCTGAATTTG
AGAAGCTAAACACAGAGATATTGGGTGTCTCAACTGACAGTGTGTTTTCA
CACTTGGCATGGGTCCCAACAGACAGAAAGTCAGGTGGTCTTGGTGATTT
GAAGTACCCACTAATTGCTGATATCACCAAATCAATTTCAAAATCCTATG
GTATTCTGATCCCTGATCAGGGAATTGCA
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