FC868618

Overview
NameFC868618
Unique NameFC868618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDXL_DICDI (Peroxiredoxin-like protein DDB_G0282517, mitochondrial OS=Dictyostelium discoideum GN=DDB_G0282517 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 37/115 (32.17%), Postives = 62/115 (53.91%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPD 667
            +G+  PDF+ ++   Q    + L   +G  + +   +P DFT +C TE+   +    EFEK N +IL +S DSV  HL W+  D +      + YP+IAD  + ++  YG++ P+
Sbjct:   35 IGDVVPDFSQDSSVGQ----INLYKTLGDSWGLFVSHPKDFTPICTTELGRLAKLKPEFEKRNCKILALSVDSVKDHLEWM-KDIEETQKVKINYPIIADQDRKVADLYGMIHPN 144          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX6_BOVIN (Peroxiredoxin-6 OS=Bos taurus GN=PRDX6 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 40/118 (33.90%), Postives = 61/118 (51.69%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGG---LGDLKYPLIADITKSISKSYGILIP 664
            L+G+ AP+F A     +    ++  DY+G  + ILF +P DFT VC TE+   +    EF K N +++ +S DSV  HLAW        G      L +P+I D  + ++   G+L P
Sbjct:    6 LLGDEAPNFEANTTIGR----IRFHDYLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKMIALSIDSVEDHLAWSKDINAYNGEEPTEKLPFPIIDDKNRDLAIQLGMLDP 119          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH2_SULME (Probable peroxiredoxin 2 OS=Sulfolobus metallicus PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  395 DYIGK-KYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGIL 658
            D  GK K++ LF +P DFT VC TE   FS  Y +F  L  +++G+S DSV+SH+ W+   ++  G+  + +P+IAD  K  ++   I+
Sbjct:   24 DIFGKGKWLFLFAHPADFTPVCTTEFVEFSKAYNDFANLGVQLVGLSVDSVYSHIEWLKDIQEKYGI-KVPFPVIADPDKKFARLLDIV 111          
The following BLAST results are available for this feature:
BLAST of FC868618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
PRDXL_DICDI4.663e-1132.17Peroxiredoxin-like protein DDB_G0282517, mitochond... [more]
PRDX6_BOVIN4.663e-1133.90Peroxiredoxin-6 OS=Bos taurus GN=PRDX6 PE=1 SV=3[more]
TDXH2_SULME7.954e-1138.20Probable peroxiredoxin 2 OS=Sulfolobus metallicus ... [more]

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Properties
Property NameValue
Genbank descriptionC31002G01EF AbioticL1 Citrus clementina cDNA clone C31002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868618 ID=FC868618; Name=FC868618; organism=Citrus clementina; type=EST; length=679bp
GGATGATTTTGAGCAACAGATATCCACACTTTGTTTTCGCCCCGTTCGTT
GACTCCAGCTGAACAAGAATACAACAACAAAAACAATGGCTTGCTCAGCT
GCTTCTGCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAA
GGCTTTCTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCC
GCTCCTTCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCC
GTTTCTCTTTCCCGCAGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGC
ATCCGTTGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTG
CAGAGGCTGTTTTCGATCAAGAGTTTATCAATGTCAAGCTTTCGGATTAC
ATTGGGAAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATT
TGTTTGCCCCACAGAAATCACTGCTTTCAGTGACCGATATGCTGAATTTG
AGAAGCTAAACACAGAGATATTGGGTGTCTCAACTGACAGTGTGTTTTCA
CACTTGGCATGGGTCCCAACAGACAGAAAGTCAGGTGGTCTTGGTGATTT
GAAGTACCCACTAATTGCTGATATCACCAAATCAATTTCAAAATCCTATG
GTATTCTGATCCCTGATCAGGGAATTGCA
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