FC868618

Overview
NameFC868618
Unique NameFC868618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDX_CYNPY (Peroxiredoxin OS=Cynops pyrrhogaster PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.687e-34
Identity = 70/120 (58.33%), Postives = 88/120 (73.33%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQ-EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            +G  AP+F A+AV    EF ++KL+DY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF K+N E++  S DS F HLAW  T RK GGLG +K PL+AD  ++IS+ YG+L  D+GI+
Sbjct:    8 IGKPAPEFQAKAVMPGGEFKDIKLADYRGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFRKINCELIAASVDSHFCHLAWTNTSRKEGGLGSMKIPLVADTKRTISQDYGVLKEDEGIS 126          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDX1_BRUMA (Thioredoxin peroxidase 1 OS=Brugia malayi GN=TSA1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.945e-33
Identity = 69/118 (58.47%), Postives = 89/118 (75.42%), Query Frame = 2
Query:  329 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKS-GGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            N APDF+  AV + +F  + + DY GK ++ILFFYPLDFTFVCPTEITAFSDR AEF+KLNTE++  S DS FSHLAW+ T R   GGLGD+K P++AD  K I+ ++G+L  + GI+
Sbjct:   37 NKAPDFSGTAVVNGDFKTISMKDYKGK-WLILFFYPLDFTFVCPTEITAFSDRCAEFQKLNTELIACSCDSHFSHLAWIQTPRSEVGGLGDMKIPVLADFNKDIANAFGVLDHETGIS 153          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX1_HUMAN (Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.334e-33
Identity = 68/120 (56.67%), Postives = 90/120 (75.00%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            +G+ AP+F A AV  D +F ++ LSDY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAWV T +K GGLG +  PL++D  ++I++ YG+L  D+GI+
Sbjct:    8 IGHPAPNFKATAVMPDGQFKDISLSDYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWVNTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGIS 126          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX1_RAT (Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.393e-33
Identity = 67/120 (55.83%), Postives = 89/120 (74.17%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            +G+ AP F A AV  D +F ++ LSDY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PL++D  ++I++ YG+L  D+GI+
Sbjct:    8 IGHPAPSFKATAVMPDGQFKDISLSDYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGIS 126          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX1_MYOLU (Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.655e-33
Identity = 66/120 (55.00%), Postives = 90/120 (75.00%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            +G+ AP+F A AV  D +F ++ LSDY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+K+N +++G S DS F HLAW+ T +K GGLG +  PL++D  ++I++ YG+L  D+GI+
Sbjct:    8 IGHPAPNFKATAVMPDGQFKDISLSDYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKINCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGIS 126          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX1_DROME (Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafrac1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.261e-32
Identity = 67/120 (55.83%), Postives = 87/120 (72.50%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGI 676
            P +   AP FA  AV +  F ++KLSDY GK Y++LFFYPLDFTFVCPTEI AFS+  AEF K+N E++G STDS F+HLAW+ T RK GGLG +  PL+AD +  +++ YG+L  + GI
Sbjct:    2 PQLQKPAPAFAGTAVVNGVFKDIKLSDYKGK-YLVLFFYPLDFTFVCPTEIIAFSESAAEFRKINCEVIGCSTDSQFTHLAWINTPRKQGGLGSMDIPLLADKSMKVARDYGVLDEETGI 120          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX1_BOVIN (Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.261e-32
Identity = 67/120 (55.83%), Postives = 89/120 (74.17%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            +G+ AP F A AV  D +F ++ L+DY GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PLI+D  ++I++ YG+L  D+GI+
Sbjct:    8 IGHRAPQFKATAVMPDGQFKDISLADYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGIS 126          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX3_RAT (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Rattus norvegicus GN=Prdx3 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.669e-32
Identity = 67/121 (55.37%), Postives = 85/121 (70.25%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            P V   AP F   AV + EF  + L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+  EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++D+TK IS+ YG+L+   GIA
Sbjct:   64 PAVTQHAPHFKGTAVVNGEFKELSLDDFKGK-YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNITLLSDLTKQISRDYGVLLESAGIA 183          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX3_MOUSE (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Mus musculus GN=Prdx3 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.669e-32
Identity = 68/121 (56.20%), Postives = 85/121 (70.25%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            P V   AP F   AV + EF  + L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+  EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++DITK IS+ YG+L+   GIA
Sbjct:   64 PAVTQHAPYFKGTAVVNGEFKELSLDDFKGK-YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNITLLSDITKQISRDYGVLLESAGIA 183          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX1_MOUSE (Peroxiredoxin-1 OS=Mus musculus GN=Prdx1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.669e-32
Identity = 67/120 (55.83%), Postives = 89/120 (74.17%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            +G  AP+F A AV  D +F ++ LS+Y GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PLI+D  ++I++ YG+L  D+GI+
Sbjct:    8 IGYPAPNFKATAVMPDGQFKDISLSEYKGK-YVVFFFYPLDFTFVCPTEIIAFSDRADEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLISDPKRTIAQDYGVLKADEGIS 126          
The following BLAST results are available for this feature:
BLAST of FC868618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
TDX_CYNPY6.687e-3458.33Peroxiredoxin OS=Cynops pyrrhogaster PE=2 SV=1[more]
TDX1_BRUMA1.945e-3358.47Thioredoxin peroxidase 1 OS=Brugia malayi GN=TSA1 ... [more]
PRDX1_HUMAN4.334e-3356.67Peroxiredoxin-1 OS=Homo sapiens GN=PRDX1 PE=1 SV=1[more]
PRDX1_RAT7.393e-3355.83Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1... [more]
PRDX1_MYOLU9.655e-3355.00Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 ... [more]
PRDX1_DROME1.261e-3255.83Peroxiredoxin 1 OS=Drosophila melanogaster GN=Jafr... [more]
PRDX1_BOVIN1.261e-3255.83Peroxiredoxin-1 OS=Bos taurus GN=PRDX1 PE=2 SV=1[more]
PRDX3_RAT3.669e-3255.37Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX3_MOUSE3.669e-3256.20Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX1_MOUSE3.669e-3255.83Peroxiredoxin-1 OS=Mus musculus GN=Prdx1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31002G01EF AbioticL1 Citrus clementina cDNA clone C31002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868618 ID=FC868618; Name=FC868618; organism=Citrus clementina; type=EST; length=679bp
GGATGATTTTGAGCAACAGATATCCACACTTTGTTTTCGCCCCGTTCGTT
GACTCCAGCTGAACAAGAATACAACAACAAAAACAATGGCTTGCTCAGCT
GCTTCTGCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAA
GGCTTTCTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCC
GCTCCTTCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCC
GTTTCTCTTTCCCGCAGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGC
ATCCGTTGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTG
CAGAGGCTGTTTTCGATCAAGAGTTTATCAATGTCAAGCTTTCGGATTAC
ATTGGGAAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATT
TGTTTGCCCCACAGAAATCACTGCTTTCAGTGACCGATATGCTGAATTTG
AGAAGCTAAACACAGAGATATTGGGTGTCTCAACTGACAGTGTGTTTTCA
CACTTGGCATGGGTCCCAACAGACAGAAAGTCAGGTGGTCTTGGTGATTT
GAAGTACCCACTAATTGCTGATATCACCAAATCAATTTCAAAATCCTATG
GTATTCTGATCCCTGATCAGGGAATTGCA
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