FC868618

Overview
NameFC868618
Unique NameFC868618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX4_HUMAN (Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.792e-32
Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQG 673
            +   AP +   AV D EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF  +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D+T  ISK YG+ + D G
Sbjct:   81 ISKPAPYWEGTAVIDGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSG 196          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX3_BOVIN (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Bos taurus GN=PRDX3 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.258e-32
Identity = 66/121 (54.55%), Postives = 85/121 (70.25%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            P V   AP F   AV   EF  + L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+ +EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++D+TK IS+ YG+L+   G+A
Sbjct:   64 PAVTQHAPYFKGTAVVSGEFKEISLDDFKGK-YLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLA 183          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX3_PONAB (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Pongo abelii GN=PRDX3 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.174e-32
Identity = 66/121 (54.55%), Postives = 86/121 (71.07%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            P V   AP F   AV + EF ++ L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+  EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++D+TK IS+ YG+L+   G+A
Sbjct:   63 PAVTQHAPYFKGTAVVNGEFKDLSLDDFKGK-YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGSGLA 182          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX3_HUMAN (Thioredoxin-dependent peroxide reductase, mitochondrial OS=Homo sapiens GN=PRDX3 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 8.174e-32
Identity = 66/121 (54.55%), Postives = 86/121 (71.07%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            P V   AP F   AV + EF ++ L D+ GK Y++LFFYPLDFTFVCPTEI AFSD+  EF  +N E++ VS DS FSHLAW+ T RK+GGLG +   L++D+TK IS+ YG+L+   G+A
Sbjct:   63 PAVTQHAPYFKGTAVVNGEFKDLSLDDFKGK-YLVLFFYPLDFTFVCPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGSGLA 182          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX1_CRIGR (Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.174e-32
Identity = 66/120 (55.00%), Postives = 89/120 (74.17%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            +G  AP+F A AV  D +F ++ LS+Y GK YV+ FFYPLDFTFVCPTEI AFSDR  EF+KLN +++G S DS F HLAW+ T +K GGLG +  PL++D  ++I++ YG+L  D+GI+
Sbjct:    8 IGYPAPNFKATAVMPDGQFRDICLSEYRGK-YVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFCHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGIS 126          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDX2_BRUMA (Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.821e-31
Identity = 66/119 (55.46%), Postives = 84/119 (70.59%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            +G  AP+F   AV + +F  + L  + GK YV+L FYPLDFTFVCPTEI AFSDR AEF++L+  ++  STDS FSHLAWV TDRK GGLG +  P++A     IS++YG+L  D GIA
Sbjct:   10 IGQPAPNFKTTAVVNGDFKEISLGQFKGK-YVVLLFYPLDFTFVCPTEIIAFSDRIAEFKQLDVAVMACSTDSHFSHLAWVNTDRKMGGLGQMNIPILAYTNHVISRAYGVLKEDDGIA 127          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDX_ECHGR (Thioredoxin peroxidase OS=Echinococcus granulosus GN=TPX PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.298e-31
Identity = 66/120 (55.00%), Postives = 83/120 (69.17%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            +VG  AP F  +A+ D E  +V LSDY GK YVILFFYP+DFTFVCPTEI AF+DR  EF +   ++L  STDS + HLAW    RK GG+  ++ P++AD    IS+ YG+LI DQGIA
Sbjct:    4 VVGKLAPSFTCKALVDGELKDVSLSDYRGK-YVILFFYPMDFTFVCPTEIIAFNDRADEFHQRGCQLLACSTDSGYCHLAWNNVSRKEGGVQGMRIPMLADTNHKISRDYGVLIEDQGIA 122          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX4_RAT (Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.298e-31
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQG 673
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF+ +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D+   ISK YG+ + D G
Sbjct:   83 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSG 198          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX4_MOUSE (Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.298e-31
Identity = 61/117 (52.14%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQG 673
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF+ +NTE++  S DS F+HLAW+ T R+ GGLG ++ PL++D+   ISK YG+ + D G
Sbjct:   84 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIEEFKSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLNHQISKDYGVYLEDSG 199          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRDX4_BOVIN (Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.298e-31
Identity = 62/117 (52.99%), Postives = 80/117 (68.38%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQG 673
            +   AP +   AV + EF  +KL+DY GK Y++ FFYPLDFTFVCPTEI AF DR  EF  +NTE++  S DS F+HLAW+ T R+ GGLG +  PL+AD+   ISK YG+ + D G
Sbjct:   84 ISKPAPYWEGTAVINGEFKELKLTDYRGK-YLVFFFYPLDFTFVCPTEIIAFGDRIDEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGSINIPLLADLNHQISKDYGVYLEDSG 199          
The following BLAST results are available for this feature:
BLAST of FC868618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
PRDX4_HUMAN4.792e-3253.85Peroxiredoxin-4 OS=Homo sapiens GN=PRDX4 PE=1 SV=1[more]
PRDX3_BOVIN6.258e-3254.55Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX3_PONAB8.174e-3254.55Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX3_HUMAN8.174e-3254.55Thioredoxin-dependent peroxide reductase, mitochon... [more]
PRDX1_CRIGR8.174e-3255.00Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=... [more]
TDX2_BRUMA1.821e-3155.46Thioredoxin peroxidase 2 OS=Brugia malayi GN=tsa-2... [more]
TDX_ECHGR5.298e-3155.00Thioredoxin peroxidase OS=Echinococcus granulosus ... [more]
PRDX4_RAT5.298e-3152.14Peroxiredoxin-4 OS=Rattus norvegicus GN=Prdx4 PE=2... [more]
PRDX4_MOUSE5.298e-3152.14Peroxiredoxin-4 OS=Mus musculus GN=Prdx4 PE=1 SV=1[more]
PRDX4_BOVIN5.298e-3152.99Peroxiredoxin-4 OS=Bos taurus GN=PRDX4 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31002G01EF AbioticL1 Citrus clementina cDNA clone C31002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868618 ID=FC868618; Name=FC868618; organism=Citrus clementina; type=EST; length=679bp
GGATGATTTTGAGCAACAGATATCCACACTTTGTTTTCGCCCCGTTCGTT
GACTCCAGCTGAACAAGAATACAACAACAAAAACAATGGCTTGCTCAGCT
GCTTCTGCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAA
GGCTTTCTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCC
GCTCCTTCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCC
GTTTCTCTTTCCCGCAGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGC
ATCCGTTGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTG
CAGAGGCTGTTTTCGATCAAGAGTTTATCAATGTCAAGCTTTCGGATTAC
ATTGGGAAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATT
TGTTTGCCCCACAGAAATCACTGCTTTCAGTGACCGATATGCTGAATTTG
AGAAGCTAAACACAGAGATATTGGGTGTCTCAACTGACAGTGTGTTTTCA
CACTTGGCATGGGTCCCAACAGACAGAAAGTCAGGTGGTCTTGGTGATTT
GAAGTACCCACTAATTGCTGATATCACCAAATCAATTTCAAAATCCTATG
GTATTCTGATCCCTGATCAGGGAATTGCA
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