FC868618

Overview
NameFC868618
Unique NameFC868618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:38..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: CR29_ENTHI (Putative peroxiredoxin OS=Entamoeba histolytica PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.816e-24
Identity = 54/120 (45.00%), Postives = 80/120 (66.67%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFIN-VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            +G  AP+F A A      I  + +++Y GK YV+L FYPLD+TFVCPTE+  +S+   + +++N E++GVS DSV+ H AW   D+  GG+G L +PL++DI + IS  YG+L  + GIA
Sbjct:   43 IGKEAPEFKAPAYCPCGSIKEIDINEYRGK-YVVLLFYPLDWTFVCPTEMIGYSELAGQLKEINCEVIGVSVDSVYCHQAWCEADKSKGGVGKLTFPLVSDIKRCISIKYGMLNVEAGIA 161          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TSAA_BUCAI (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU182 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.803e-24
Identity = 55/122 (45.08%), Postives = 78/122 (63.93%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFDQEFI--NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            LV   AP+F A A+     I     L  Y   +  +LFF+P+DFTFVCP+EI  F+  ++EF+K N +I+GVS DSV+ H AW  T  K+GG+G + +P+++D+   I KSYGI  P+ GIA
Sbjct:    3 LVTQNAPNFIAPAILKNNQIVEQFDLKKYSNGQSTVLFFWPMDFTFVCPSEIIEFNKLHSEFKKRNVKIVGVSIDSVYVHQAWQNTLPKNGGIGKINFPMVSDVKHDIQKSYGIQHPNLGIA 124          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TSAA_HELPJ (Probable peroxiredoxin OS=Helicobacter pylori J99 GN=tsaA PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.070e-23
Identity = 56/118 (47.46%), Postives = 74/118 (62.71%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFDQEFIN--VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPD 667
            LV   APDF A AV     ++   +LS  +GK  VILFF+P DFTFVCPTEI AF  R  +F +    ++GVS DS   H AW  T  + GG+G + +P++ADITKSIS+ Y +L  +
Sbjct:    2 LVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEE 119          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TSA1_CANAL (Peroxiredoxin TSA1 OS=Candida albicans GN=TSA1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.397e-23
Identity = 54/121 (44.63%), Postives = 78/121 (64.46%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            P+V   AP F   AV D  F  V L  Y GK +V+L F PL FTFVCP+EI A+S+   +F + + ++L  STDS ++ LAW    RK GG+G + +P++AD   S+S+ YG+LI ++G+A
Sbjct:    3 PVVQQPAPSFKKTAVVDGVFEEVTLEQYKGK-WVLLAFIPLAFTFVCPSEIIAYSEAVKKFAEKDAQVLFASTDSEYTWLAWTNVARKDGGIGKVDFPVLADTNHSLSRDYGVLIEEEGVA 122          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TSAA_HELPY (Probable peroxiredoxin OS=Helicobacter pylori GN=tsaA PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23
Identity = 55/118 (46.61%), Postives = 74/118 (62.71%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFDQEFIN--VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPD 667
            LV   APDF A AV     ++   +LS  +GK   ILFF+P DFTFVCPTEI AF  R  +F++    ++GVS DS   H AW  T  + GG+G + +P++ADITKSIS+ Y +L  +
Sbjct:    2 LVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGAILFFWPKDFTFVCPTEIIAFDKRVKDFQEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVTFPMVADITKSISRDYDVLFEE 119          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TSAA_BUCAP (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=BUsg_176 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23
Identity = 56/122 (45.90%), Postives = 76/122 (62.30%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFDQEFI--NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            LV   AP+F A A+     I  N  L  Y   +  +LFF+P+DFTFVCP+EI  F+  +  FEK N +I+GVS DSVF H AW  T  ++GG+G +K+P+++DI   I KSY I  P+  IA
Sbjct:    3 LVTQKAPNFIAPAILKNGKIMNNFDLKKYSNGQITVLFFWPMDFTFVCPSEIIEFNKTFEAFEKRNVKIVGVSIDSVFVHQAWQNTFPENGGIGKIKFPMVSDIKHEIQKSYHIEHPELNIA 124          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRXU_EUBAC (Selenocysteine-containing peroxiredoxin prxU OS=Eubacterium acidaminophilum GN=prxU PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.446e-20
Identity = 48/118 (40.68%), Postives = 72/118 (61.02%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGI 676
            VG  APDF     +  EF   +LS+Y+GK +V+L FYP DFTFV  TE++A +++Y EF+KL  E+L VS DSVF H  W   +      G + +P+++D   ++   YG+  P+ G+
Sbjct:    4 VGKKAPDFEMAGFYKGEFKTFRLSEYLGK-WVVLCFYPGDFTFVUATEVSAVAEKYPEFQKLGVEVLSVSVDSVFVHKMWNDNELSKMVEGGIPFPMLSDGGGNVGTLYGVYDPEAGV 120          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TSAA_BUCBP (Probable peroxiredoxin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=bbp_171 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 49/122 (40.16%), Postives = 75/122 (61.48%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFDQEFI--NVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            LV   APDF A A+     I  N    ++   +  ILFF+P+DFTFVCP+EI AF+   ++F+K N +++GVS DSV+ H AW  T   +G +  + + +++D+ + I +SYGI  P  G+A
Sbjct:    3 LVTYPAPDFTASAISCNGDIINNFNFKEFTNNQTSILFFWPMDFTFVCPSEIIAFNQELSKFKKRNVKLIGVSIDSVYVHHAWRNTLSHNGQIDKINFTMVSDLKREIQRSYGIEHPQLGVA 124          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH_THEVO (Probable peroxiredoxin OS=Thermoplasma volcanium GN=TV1123 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.467e-20
Identity = 50/121 (41.32%), Postives = 78/121 (64.46%), Query Frame = 2
Query:  311 IPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQG 673
            +P ++G  APDF            + LS+Y GK +V+LF +P DFT VC TE  AF++RY +F+KL  E++G+S DSVFSH+AW+   ++  G+ D+ +P+IADI K +++ Y ++    G
Sbjct:    1 MPVVLGQKAPDFTVNTSKGP----ITLSNYRGK-WVLLFSHPGDFTPVCTTEFIAFTERYEDFQKLGVELIGLSIDSVFSHIAWIRDIKEHFGI-DIPFPIIADIDKEVAREYNLIDEKSG 115          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH_AQUAE (Probable peroxiredoxin OS=Aquifex aeolicus GN=aq_858 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.727e-19
Identity = 48/118 (40.68%), Postives = 72/118 (61.02%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQ 670
            P +G  AP F A+  F      VK  D    ++V+LF +P DFT VC TE  AF+  Y EF+K N +++G+S DS FSH+AWV   ++  G+ ++ +P+IAD    ++K YG++ P Q
Sbjct:    7 PRLGEPAPAFEAQTTFGP----VKFPDDFKGQWVVLFSHPADFTPVCTTEFVAFAKNYEEFKKRNVQLIGLSVDSNFSHIAWVMNIKEKFGI-EIPFPIIADHNMEVAKKYGMIHPAQ 119          
The following BLAST results are available for this feature:
BLAST of FC868618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
CR29_ENTHI2.816e-2445.00Putative peroxiredoxin OS=Entamoeba histolytica PE... [more]
TSAA_BUCAI4.803e-2445.08Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]
TSAA_HELPJ1.070e-2347.46Probable peroxiredoxin OS=Helicobacter pylori J99 ... [more]
TSA1_CANAL1.397e-2344.63Peroxiredoxin TSA1 OS=Candida albicans GN=TSA1 PE=... [more]
TSAA_HELPY2.384e-2346.61Probable peroxiredoxin OS=Helicobacter pylori GN=t... [more]
TSAA_BUCAP2.384e-2345.90Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]
PRXU_EUBAC1.446e-2040.68Selenocysteine-containing peroxiredoxin prxU OS=Eu... [more]
TSAA_BUCBP2.467e-2040.16Probable peroxiredoxin OS=Buchnera aphidicola subs... [more]
TDXH_THEVO2.467e-2041.32Probable peroxiredoxin OS=Thermoplasma volcanium G... [more]
TDXH_AQUAE2.727e-1940.68Probable peroxiredoxin OS=Aquifex aeolicus GN=aq_8... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31002G01EF AbioticL1 Citrus clementina cDNA clone C31002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868618 ID=FC868618; Name=FC868618; organism=Citrus clementina; type=EST; length=679bp
GGATGATTTTGAGCAACAGATATCCACACTTTGTTTTCGCCCCGTTCGTT
GACTCCAGCTGAACAAGAATACAACAACAAAAACAATGGCTTGCTCAGCT
GCTTCTGCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAA
GGCTTTCTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCC
GCTCCTTCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCC
GTTTCTCTTTCCCGCAGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGC
ATCCGTTGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTG
CAGAGGCTGTTTTCGATCAAGAGTTTATCAATGTCAAGCTTTCGGATTAC
ATTGGGAAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATT
TGTTTGCCCCACAGAAATCACTGCTTTCAGTGACCGATATGCTGAATTTG
AGAAGCTAAACACAGAGATATTGGGTGTCTCAACTGACAGTGTGTTTTCA
CACTTGGCATGGGTCCCAACAGACAGAAAGTCAGGTGGTCTTGGTGATTT
GAAGTACCCACTAATTGCTGATATCACCAAATCAATTTCAAAATCCTATG
GTATTCTGATCCCTGATCAGGGAATTGCA
back to top