FC868618

Overview
NameFC868618
Unique NameFC868618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH_METJA (Probable peroxiredoxin OS=Methanocaldococcus jannaschii GN=MJ0736 PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKK--YVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQG 673
            P++G   P+   +         +KL DY  +K  + +LF +P DFT VC TE   F  RY EF KLNTE++G+S D VFSHL WV   ++   + ++++P+IAD    +++  G++ P +G
Sbjct:    2 PVIGEKFPEVEVKTTHGA----IKLPDYYVEKGKWFVLFSHPADFTPVCTTEFVGFQKRYDEFRKLNTELIGLSIDQVFSHLKWVEWIKEKLNV-EIEFPIIADDRGELAEKLGMISPYKG 117          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH_IGNH4 (Probable peroxiredoxin OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=Igni_0459 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 45/120 (37.50%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGI 676
            PL+G   P    E V   +    KL D    K++++F +P DFT VC TE  AF+ RY +F+KLNTE+LG+S D+ FSH+ W    ++   + ++ +P+IAD    ++   G+L P+ G+
Sbjct:    6 PLIGEKLP----EMVVHTDHGPKKLPDDYKGKWLVIFSHPADFTPVCTTEFVAFAKRYEDFKKLNTELLGLSVDNSFSHIKWKEWIKEKLNV-EIPFPIIADPLGQVATKLGMLHPEGGV 120          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_SALTY (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhimurium GN=ahpC PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            L+      F  +A  + EFI V   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D T ++++++  +  D+G+A
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW---HSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLA 118          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_SALTI (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhi GN=ahpC PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            L+      F  +A  + EFI V   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D T ++++++  +  D+G+A
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW---HSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLA 118          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_SHIFL (Alkyl hydroperoxide reductase subunit C OS=Shigella flexneri GN=ahpC PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 43/120 (35.83%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            L+      F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D T ++++++  +  D+G+A
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAW---HSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLA 118          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_ECOLI (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli (strain K12) GN=ahpC PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 43/120 (35.83%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            L+      F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D T ++++++  +  D+G+A
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAW---HSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLA 118          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_ECOL6 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O6 GN=ahpC PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 43/120 (35.83%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            L+      F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D T ++++++  +  D+G+A
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAW---HSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLA 118          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_ECO57 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O157:H7 GN=ahpC PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 43/120 (35.83%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            L+      F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW      S  +  +KY +I D T ++++++  +  D+G+A
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAW---HSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLA 118          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH2_SULTO (Probable peroxiredoxin 2 OS=Sulfolobus tokodaii GN=ST2442 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.401e-15
Identity = 43/114 (37.72%), Postives = 69/114 (60.53%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGIL 658
            PL+G   P+        +    +KL DY   K+ +LF +P DFT VC TE  +F+ +Y EF+KLNTE++G+S DS  SH+ WV    K+  + ++ +P+IAD   +++K  G++
Sbjct:    7 PLIGEKFPEMEVITTHGK----IKLPDYYQGKWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKV-EIPFPIIADPMGNVAKRLGMI 115          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_BACSU (Alkyl hydroperoxide reductase subunit C OS=Bacillus subtilis GN=ahpC PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15
Identity = 42/120 (35.00%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  320 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            L+G     F A+A  + EFI+V   D  G+ + +  FYP DF+FVCPTE+    ++YA  ++L  E+  VSTD+ F H  W  +  K   +  + Y +I D +++IS+++ +L  + G+A
Sbjct:    3 LIGKEVLPFEAKAFKNGEFIDVTNEDLKGQ-WSVFCFYPADFSFVCPTELEDLQEQYAALKELGVEVYSVSTDTHFVHKGWHDSSEK---ISKITYAMIGDPSQTISRNFDVLDEETGLA 118          
The following BLAST results are available for this feature:
BLAST of FC868618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
TDXH_METJA2.161e-1637.19Probable peroxiredoxin OS=Methanocaldococcus janna... [more]
TDXH_IGNH42.822e-1637.50Probable peroxiredoxin OS=Ignicoccus hospitalis (s... [more]
AHPC_SALTY3.686e-1636.67Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]
AHPC_SALTI3.686e-1636.67Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]
AHPC_SHIFL4.814e-1635.83Alkyl hydroperoxide reductase subunit C OS=Shigell... [more]
AHPC_ECOLI4.814e-1635.83Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECOL64.814e-1635.83Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECO574.814e-1635.83Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
TDXH2_SULTO1.401e-1537.72Probable peroxiredoxin 2 OS=Sulfolobus tokodaii GN... [more]
AHPC_BACSU5.323e-1535.00Alkyl hydroperoxide reductase subunit C OS=Bacillu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31002G01EF AbioticL1 Citrus clementina cDNA clone C31002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868618 ID=FC868618; Name=FC868618; organism=Citrus clementina; type=EST; length=679bp
GGATGATTTTGAGCAACAGATATCCACACTTTGTTTTCGCCCCGTTCGTT
GACTCCAGCTGAACAAGAATACAACAACAAAAACAATGGCTTGCTCAGCT
GCTTCTGCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAA
GGCTTTCTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCC
GCTCCTTCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCC
GTTTCTCTTTCCCGCAGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGC
ATCCGTTGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTG
CAGAGGCTGTTTTCGATCAAGAGTTTATCAATGTCAAGCTTTCGGATTAC
ATTGGGAAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATT
TGTTTGCCCCACAGAAATCACTGCTTTCAGTGACCGATATGCTGAATTTG
AGAAGCTAAACACAGAGATATTGGGTGTCTCAACTGACAGTGTGTTTTCA
CACTTGGCATGGGTCCCAACAGACAGAAAGTCAGGTGGTCTTGGTGATTT
GAAGTACCCACTAATTGCTGATATCACCAAATCAATTTCAAAATCCTATG
GTATTCTGATCCCTGATCAGGGAATTGCA
back to top