FC868618

Overview
NameFC868618
Unique NameFC868618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH_METVS (Probable peroxiredoxin OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0492 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = 2
Query:  356 AVFDQEFINVKLSDYIGK-----------KYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQG 673
            AV  ++F +V+L    GK           K+ +LF +P DFT VC TE  AF  RY +F +LNTE++G+S D VFSH+ WV   ++   + D+++P+IAD    ++   G++ P +G
Sbjct:    2 AVIGEKFPDVELLTTHGKLKLPEHFIEAGKWFVLFSHPGDFTPVCTTEFVAFQKRYDQFRELNTELIGLSIDQVFSHIKWVEWIKEKLDV-DIEFPIIADERGDLAVKLGMISPFKG 117          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH1_THETN (Probable peroxiredoxin 1 OS=Thermoanaerobacter tengcongensis GN=TTE0270 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  395 DYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQG 673
            DY GK +V LF +P DFT VC TE   F+ +  EF++LNTE++G+S D VFSH+ WV   + + G+  + +P+IAD    +S   G++ P +G
Sbjct:   25 DYAGKWFV-LFSHPADFTPVCTTEFVEFARKAEEFKQLNTELIGLSVDQVFSHIKWVEWIKDNTGV-QIPFPVIADELGRVSNQLGMIHPGKG 115          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH_SULSO (Probable peroxiredoxin OS=Sulfolobus solfataricus GN=SSO2121 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 42/114 (36.84%), Postives = 70/114 (61.40%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGIL 658
            PL+G   P+   E +  Q    +KL D    ++ +LF +P DFT VC TE  +F+ +Y EF+KLNTE++G+S DS  SH+ W+    K+  + ++ +P+IAD   +++K  G++
Sbjct:    7 PLIGERFPEM--EVITTQG--RIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWIMWIEKNLKV-EIPFPIIADPMGNVAKRLGMI 115          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: REHY_WHEAT (1-Cys peroxiredoxin PER1 OS=Triticum aestivum GN=PER1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQ 670
            +G+T P+   ++   +    +++ DY+G  YVILF +P DFT VC TE+ A ++   EFEK   ++LG+S D V SH  W            + YP++AD  +S  K   ++ PD+
Sbjct:    6 IGDTVPNLELDSTHGK----IRIHDYVGNGYVILFSHPGDFTPVCTTELAAMANYAKEFEKRGVKLLGISCDDVQSHKEWTKDIEAYKPGSKVTYPIMADPDRSAIKQLNMVDPDE 117          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: REHY_HORVU (1-Cys peroxiredoxin PER1 OS=Hordeum vulgare GN=PER1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQ 670
            +G+T P+   ++   +    +++ DY+G  YVILF +P DFT VC TE+ A ++   EFEK   ++LG+S D V SH  W            + YP++AD  +S  K   ++ PD+
Sbjct:    6 IGDTVPNLELDSTHGK----IRIHDYVGNGYVILFSHPGDFTPVCTTELAAMANYAKEFEKRGVKLLGISCDDVQSHKEWTKDIEAYKPGSKVTYPIMADPDRSAIKQLNMVDPDE 117          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH_METMP (Probable peroxiredoxin OS=Methanococcus maripaludis GN=MMP1174 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 37/88 (42.05%), Postives = 58/88 (65.91%), Query Frame = 2
Query:  410 KYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQG 673
            K+ +LF +P DFT VC TE  AF  RY +F +LNTE++G+S D VFSH+ WV   ++   + D+++P+IAD    ++   G++ P +G
Sbjct:   31 KWFVLFSHPGDFTPVCTTEFVAFQKRYDQFRELNTELIGLSIDQVFSHIKWVEWIKEKLDV-DIEFPIIADDRGELAVKLGMISPYKG 117          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH_METM5 (Probable peroxiredoxin OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0413 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 37/88 (42.05%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  410 KYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQG 673
            K+ +LF +P DFT VC TE  AF  RY +F  LNTE++G+S D VFSH+ WV   ++   + D+++P+IAD    ++   G++ P +G
Sbjct:   31 KWFVLFSHPGDFTPVCTTEFVAFQKRYDQFRSLNTELIGLSIDQVFSHIKWVEWIKEKLDV-DIEFPIIADDRGELAVKLGMISPYKG 117          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH1_PICTO (Probable peroxiredoxin 1 OS=Picrophilus torridus GN=PTO0377 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 40/114 (35.09%), Postives = 67/114 (58.77%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGIL 658
            PL+G   P+            N+KL D    K+ +LF +P DFT VC TE  +F+  + +F+KLNTE++G+S DS  SH+ W+   +++  + D+K+P+IAD    ++   G++
Sbjct:    6 PLIGEKFPEMEVVTNLG----NIKLPDDFKGKWFVLFSHPGDFTPVCTTEFFSFAKHHDDFKKLNTELIGLSVDSKISHIEWINWIKQNLKI-DIKFPIIADPMGHVATKLGMI 114          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH_NANEQ (Probable peroxiredoxin OS=Nanoarchaeum equitans GN=NEQ191 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 34/97 (35.05%), Postives = 62/97 (63.92%), Query Frame = 2
Query:  383 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQG 673
            ++L D+   K+ +LF +P DFT VC TE   F+  Y +F+ +NTE++G+S D VFSH+ W+   ++   + ++ +P+IAD    +++  G++ P +G
Sbjct:   20 MRLPDHYRGKWFVLFSHPADFTPVCTTEFVEFARNYDKFKAMNTELIGLSIDQVFSHIKWIEWIKEKFNV-EIPFPVIADDQGELARMLGMISPYKG 115          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH_AERPE (Probable peroxiredoxin OS=Aeropyrum pernix GN=APE_2278 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 43/116 (37.07%), Postives = 70/116 (60.34%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSD-YIGK-KYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGIL 658
            PL+G   P+   E   D   I  KL D Y+ + K+ +LF +P DFT VC TE  +F+ RY +F++L  +++G+S DSVFSH+ W     +  G+  + +P+IAD   ++++  G+L
Sbjct:    6 PLIGERFPEM--EVTTDHGVI--KLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLL 116          
The following BLAST results are available for this feature:
BLAST of FC868618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
TDXH_METVS1.549e-1437.61Probable peroxiredoxin OS=Methanococcus vannielii ... [more]
TDXH1_THETN2.023e-1443.01Probable peroxiredoxin 1 OS=Thermoanaerobacter ten... [more]
TDXH_SULSO3.450e-1436.84Probable peroxiredoxin OS=Sulfolobus solfataricus ... [more]
REHY_WHEAT3.450e-1434.481-Cys peroxiredoxin PER1 OS=Triticum aestivum GN=P... [more]
REHY_HORVU3.450e-1434.481-Cys peroxiredoxin PER1 OS=Hordeum vulgare GN=PER... [more]
TDXH_METMP4.506e-1442.05Probable peroxiredoxin OS=Methanococcus maripaludi... [more]
TDXH_METM55.885e-1442.05Probable peroxiredoxin OS=Methanococcus maripaludi... [more]
TDXH1_PICTO5.885e-1435.09Probable peroxiredoxin 1 OS=Picrophilus torridus G... [more]
TDXH_NANEQ1.712e-1335.05Probable peroxiredoxin OS=Nanoarchaeum equitans GN... [more]
TDXH_AERPE2.236e-1337.07Probable peroxiredoxin OS=Aeropyrum pernix GN=APE_... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31002G01EF AbioticL1 Citrus clementina cDNA clone C31002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868618 ID=FC868618; Name=FC868618; organism=Citrus clementina; type=EST; length=679bp
GGATGATTTTGAGCAACAGATATCCACACTTTGTTTTCGCCCCGTTCGTT
GACTCCAGCTGAACAAGAATACAACAACAAAAACAATGGCTTGCTCAGCT
GCTTCTGCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAA
GGCTTTCTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCC
GCTCCTTCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCC
GTTTCTCTTTCCCGCAGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGC
ATCCGTTGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTG
CAGAGGCTGTTTTCGATCAAGAGTTTATCAATGTCAAGCTTTCGGATTAC
ATTGGGAAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATT
TGTTTGCCCCACAGAAATCACTGCTTTCAGTGACCGATATGCTGAATTTG
AGAAGCTAAACACAGAGATATTGGGTGTCTCAACTGACAGTGTGTTTTCA
CACTTGGCATGGGTCCCAACAGACAGAAAGTCAGGTGGTCTTGGTGATTT
GAAGTACCCACTAATTGCTGATATCACCAAATCAATTTCAAAATCCTATG
GTATTCTGATCCCTGATCAGGGAATTGCA
back to top