FC868618

Overview
NameFC868618
Unique NameFC868618
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH1_SULTO (Probable peroxiredoxin 1 OS=Sulfolobus tokodaii GN=ST0584 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  395 DYIGK-KYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISK 643
            D  GK K++ LF +P DFT VC TE  AFS +Y EF+KL  E++G+S DS++SH+ W+    +  G+  + +P+IAD  K +++
Sbjct:   25 DIFGKGKWLFLFAHPADFTPVCTTEFVAFSQKYEEFKKLGVELVGLSVDSIYSHIQWLMDIEQRYGV-KVPFPVIADPDKKLAR 107          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH1_SULME (Probable peroxiredoxin 1 OS=Sulfolobus metallicus PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 35/89 (39.33%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  410 KYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGI 676
            K++ LF +P DFT VC TE   FS  Y EF++LN E++G+S DS++SH+ W+   ++  G+  + +PLIAD  K +++   I+    G+
Sbjct:   30 KWLFLFAHPADFTPVCTTEFVGFSKVYEEFKRLNVELVGMSVDSIYSHIEWLKDIQERYGI-QVPFPLIADPDKRLARLLDIIDEASGV 117          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: REHYA_ORYSJ (1-Cys peroxiredoxin A OS=Oryza sativa subsp. japonica GN=Os07g0638300 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 37/116 (31.90%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQ 670
            +G+T P+   ++   +    +++ D++G  YVILF +P DFT VC TE+ A +    EF+K   ++LG+S D V SH  W+           + YP++AD ++   K   ++ PD+
Sbjct:    6 IGDTVPNLELDSTHGK----IRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKDWIKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPDE 117          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: YNDH_BACYN (Putative peroxiredoxin in ndh 5'region (Fragment) OS=Bacillus sp. (strain YN-1) PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  371 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            EFI V    + G+ + +L FYP DFTFVCPTE+    + YA  ++L  E+   STD+ F+H  W      S  +G + Y +I D ++++S+++ +L    G+A
Sbjct:    1 EFIEVSEESFKGQ-WSVLCFYPADFTFVCPTELEDLQNEYAALKELGVEVFSASTDTHFTHKGW---HDSSETIGKITYAMIGDPSQTLSRNFDVLNEVSGLA 99          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: REHYA_ORYSI (1-Cys peroxiredoxin A OS=Oryza sativa subsp. indica GN=OsI_27030 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 36/116 (31.03%), Postives = 64/116 (55.17%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQ 670
            +G+T P+   ++   +    +++ D++G  Y+ILF +P DFT VC TE+ A +    EF+K   ++LG+S D V SH  W+           + YP++AD ++   K   ++ PD+
Sbjct:    6 IGDTVPNLELDSTHGK----IRIHDFVGDTYIILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKDWIKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPDE 117          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH1_THEAC (Probable peroxiredoxin 1 OS=Thermoplasma acidophilum GN=Ta0473 PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 37/114 (32.46%), Postives = 66/114 (57.89%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGIL 658
            PL+G   P+   E        ++KL D    ++ +LF +P DFT VC TE  +F+ R+ +F+K+NT+++G+S DS  SH+ WV   R +  + ++ +P+I D    ++   G++
Sbjct:    8 PLIGEKFPEMTVETTHG----SMKLPDQYKGRWFMLFSHPGDFTPVCTTEFYSFARRFEDFQKINTDLIGLSVDSTISHIEWVNWIRDNLKI-EVPFPIIGDSMGRVATRLGMI 116          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: REHY_BROSE (Probable 1-Cys peroxiredoxin (Fragment) OS=Bromus secalinus PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 2
Query:  383 VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQ 670
            +++ DY+   YVILF +P DFT VC TE+ A ++   EFEK   ++LG+S D V SH  W            + YP++AD  +S  K   ++ PD+
Sbjct:    6 IRIHDYVANGYVILFSHPGDFTPVCTTELAAMANYAKEFEKRGVKLLGISCDDVQSHKEWTKDIEAYKPGSKVTYPIMADPDRSAIKQLNMVDPDE 101          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: AHPC_STAES (Alkyl hydroperoxide reductase subunit C OS=Staphylococcus epidermidis (strain ATCC 12228) GN=ahpC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  371 EFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIPDQGIA 679
            EF  V   D+ G   V+ F YP DF+FVCPTE+    ++YA+ ++L   +  VSTD+ F H AW      S  +  L+Y +I D +++I++++ +L  + G+A
Sbjct:   22 EFKEVTQEDFKGSWNVVCF-YPADFSFVCPTELEDLQNQYAKLQELGVNVYSVSTDTHFVHKAW---HDHSDAISKLEYSMIGDPSQTITRNFDVLDEESGLA 120          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: TDXH_METTH (Probable peroxiredoxin OS=Methanobacterium thermoautotrophicum GN=MTH_159 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 39/116 (33.62%), Postives = 67/116 (57.76%), Query Frame = 2
Query:  317 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGILIP 664
            PL+G+  P+   +         ++L D    K+ ILF +P DFT VC TE  AF + Y E  +L+ E++G+S D VFSH+ W+    ++    ++++P+IAD T  ++ + G++ P
Sbjct:    2 PLIGDKFPEMEVQTTHGP----MELPDEFEGKWFILFSHPADFTPVCTTEFVAFQEVYPELRELDCELVGLSVDQVFSHIKWIEWIAENLDT-EIEFPVIAD-TGRVADTLGLIHP 111          
BLAST of FC868618 vs. ExPASy Swiss-Prot
Match: PRX1_YEAST (Mitochondrial peroxiredoxin PRX1 OS=Saccharomyces cerevisiae GN=PRX1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 33/112 (29.46%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  323 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYAEFEKLNTEILGVSTDSVFSHLAWVPTDRKSGGLGDLKYPLIADITKSISKSYGIL 658
            + + AP+F A+    +    +   DY+G  + +LF +P DFT VC TE++AF+    EF+K N +++G+S + V SH  W+   ++   + ++ +P+I D  ++++  Y ++
Sbjct:   51 INSDAPNFDADTTVGK----INFYDYLGDSWGVLFSHPADFTPVCTTEVSAFAKLKPEFDKRNVKLIGLSVEDVESHEKWIQDIKEIAKVKNVGFPIIGDTFRNVAFLYDMV 158          
The following BLAST results are available for this feature:
BLAST of FC868618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
TDXH1_SULTO4.982e-1342.86Probable peroxiredoxin 1 OS=Sulfolobus tokodaii GN... [more]
TDXH1_SULME4.982e-1339.33Probable peroxiredoxin 1 OS=Sulfolobus metallicus ... [more]
REHYA_ORYSJ4.982e-1331.901-Cys peroxiredoxin A OS=Oryza sativa subsp. japon... [more]
YNDH_BACYN6.507e-1335.92Putative peroxiredoxin in ndh 5'region (Fragment) ... [more]
REHYA_ORYSI6.507e-1331.031-Cys peroxiredoxin A OS=Oryza sativa subsp. indic... [more]
TDXH1_THEAC8.498e-1332.46Probable peroxiredoxin 1 OS=Thermoplasma acidophil... [more]
REHY_BROSE1.450e-1237.50Probable 1-Cys peroxiredoxin (Fragment) OS=Bromus ... [more]
AHPC_STAES1.450e-1235.92Alkyl hydroperoxide reductase subunit C OS=Staphyl... [more]
TDXH_METTH1.893e-1233.62Probable peroxiredoxin OS=Methanobacterium thermoa... [more]
PRX1_YEAST1.893e-1229.46Mitochondrial peroxiredoxin PRX1 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC31002G01EF AbioticL1 Citrus clementina cDNA clone C31002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868618 ID=FC868618; Name=FC868618; organism=Citrus clementina; type=EST; length=679bp
GGATGATTTTGAGCAACAGATATCCACACTTTGTTTTCGCCCCGTTCGTT
GACTCCAGCTGAACAAGAATACAACAACAAAAACAATGGCTTGCTCAGCT
GCTTCTGCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAA
GGCTTTCTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCC
GCTCCTTCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCC
GTTTCTCTTTCCCGCAGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGC
ATCCGTTGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTG
CAGAGGCTGTTTTCGATCAAGAGTTTATCAATGTCAAGCTTTCGGATTAC
ATTGGGAAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATT
TGTTTGCCCCACAGAAATCACTGCTTTCAGTGACCGATATGCTGAATTTG
AGAAGCTAAACACAGAGATATTGGGTGTCTCAACTGACAGTGTGTTTTCA
CACTTGGCATGGGTCCCAACAGACAGAAAGTCAGGTGGTCTTGGTGATTT
GAAGTACCCACTAATTGCTGATATCACCAAATCAATTTCAAAATCCTATG
GTATTCTGATCCCTGATCAGGGAATTGCA
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