FC868624

Overview
NameFC868624
Unique NameFC868624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_DEIDV (L-threonine 3-dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=tdh PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.170e-20
Identity = 54/133 (40.60%), Postives = 77/133 (57.89%), Query Frame = 2
Query:  281 ELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            E+P  GP D+L+R+K   ICG+DVH  K    A   +  PMV+GHE  GV+  +GSEV+    GDRV+ E  ++C  C +C+ GR +LC   +      P  GS A  +V PA   FKLPD++  +  A+ +P
Sbjct:   19 EVPRPGPNDLLIRVKKGSICGTDVHIYKWDEWAQKTIPVPMVVGHEYVGVVAAMGSEVRGFNVGDRVSGEGHVTCGHCRNCRAGRRHLCRNTLGVGVNRP--GSFAEYLVLPAFNAFKLPDDIPDDVAAIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_DEIRA (L-threonine 3-dehydrogenase OS=Deinococcus radiodurans GN=tdh PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 2
Query:  281 ELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            E+P+ GP D+L+R++   ICG+DVH  K    A   V  PMV+GHE  GV+  +GSEV+    GDRV+ E  ++C  C +C+ GR +LC   +        GS A  +V PA   FKLPD++  +  A+ +P
Sbjct:   19 EVPTPGPNDLLIRIRKGSICGTDVHIYKWDDWASQTVPVPMVVGHEYVGVVAGMGSEVRGFEIGDRVSGEGHVTCGHCRNCRAGRRHLCRNTQGVGVNR-PGSFAEYLVLPAFNAFKLPDDIPDDVAAIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_COLP3 (L-threonine 3-dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tdh PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 53/132 (40.15%), Postives = 73/132 (55.30%), Query Frame = 2
Query:  281 ELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            E P LG  D+L+++K   ICG+D+H       A   V  PMV+GHE AG +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FKLPD +S +  ++ +P
Sbjct:   19 EKPKLGHNDLLIKIKKTAICGTDIHIYNWDEWAQKTVPTPMVVGHEYAGEVVGIGQEVKGFTLGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNRA-GSFAEYLVIPAYNAFKLPDEISDDLASIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_ANADF (L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=tdh PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19
Identity = 49/132 (37.12%), Postives = 77/132 (58.33%), Query Frame = 2
Query:  284 LPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            +P +G +DV +R++   ICG+DVH       +   +  PM++GHE  GV++ VG EV+   PGDRV+ E  ++C  C +C+ GR +LC   +      P  GS A  VV PAD  +++PD++  E  A+ +P
Sbjct:   21 VPEVGVHDVRIRVRKSAICGTDVHIYNWDEWSQRTIPVPMIVGHEYVGVVDAVGGEVEAFHPGDRVSGEGHVTCGFCRNCRAGRRHLCRHTIGVGVNRP--GSFAEYVVIPADNVYRIPDDIPDEVAAIFDP 150          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_SERP5 (L-threonine 3-dehydrogenase OS=Serratia proteamaculans (strain 568) GN=tdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 49/130 (37.69%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  287 PSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  ++ +P
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFTVGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELASIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_ANAD2 (L-threonine 3-dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=tdh PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 2
Query:  284 LPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            +P +G +DV++R+    ICG+DVH       +   V  PMV+GHE  G +EKVG+EV+   PG+RV+ E  ++C  C +C+ GR +LC            GS A  VV PAD  +++PD++  +  A+ +P
Sbjct:   21 VPEVGVHDVMIRVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVEKVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHLCRHTVGVGVNR-PGSFAEYVVIPADNVYRIPDDIPDDIAAIFDP 150          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_YERPY (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=tdh PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  287 PSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_YERPS (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis GN=tdh PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  287 PSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_YERPP (L-threonine 3-dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=tdh PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  287 PSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_YERPN (L-threonine 3-dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tdh PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.611e-19
Identity = 50/130 (38.46%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  287 PSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDP 149          
The following BLAST results are available for this feature:
BLAST of FC868624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
TDH_DEIDV4.170e-2040.60L-threonine 3-dehydrogenase OS=Deinococcus deserti... [more]
TDH_DEIRA5.447e-2040.15L-threonine 3-dehydrogenase OS=Deinococcus radiodu... [more]
TDH_COLP35.447e-2040.15L-threonine 3-dehydrogenase OS=Colwellia psychrery... [more]
TDH_ANADF1.585e-1937.12L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp... [more]
TDH_SERP52.703e-1937.69L-threonine 3-dehydrogenase OS=Serratia proteamacu... [more]
TDH_ANAD22.703e-1937.40L-threonine 3-dehydrogenase OS=Anaeromyxobacter de... [more]
TDH_YERPY4.611e-1938.46L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_YERPS4.611e-1938.46L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_YERPP4.611e-1938.46L-threonine 3-dehydrogenase OS=Yersinia pestis (st... [more]
TDH_YERPN4.611e-1938.46L-threonine 3-dehydrogenase OS=Yersinia pestis bv.... [more]

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Properties
Property NameValue
Genbank descriptionC31002G07EF AbioticL1 Citrus clementina cDNA clone C31002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868624 ID=FC868624; Name=FC868624; organism=Citrus clementina; type=EST; length=676bp
TATGCCGGGGAGAAACAATAATCTACACGGTCAAATAAAAAGAACACTTG
ATGTTATGCTAAACTTGTCATTAAATATTCCTGCGACCGAATCAAATCAT
ATCCAATATCCAGAATCAGATAGTGTACAGAGTGAAGTCTCTGCTGTGCA
CTTGTGTTTTGAAGGGTGAAAAGCAAATATGGGCAAAGGAGGGATGTCGC
AAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATG
GGTGTCAACACCCTCAAGATTCAGCCTTTTGAGCTTCCTTCTCTGGGACC
ATATGATGTTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATG
TGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGCCT
ATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGA
GGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGATCA
GCTGCTGGCGATGTGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCA
GAGATGAAATTTTTTGCAACTCCGCCAGTTCATGGTTCTCTGGCTAATCA
GGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCC
TGGAGGAAGGGGCTATGTGTGAGCCC
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