FC868624

Overview
NameFC868624
Unique NameFC868624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_THETN (L-threonine 3-dehydrogenase OS=Thermoanaerobacter tengcongensis GN=tdh PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.949e-14
Identity = 42/132 (31.82%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  281 ELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            E+P +GP +VL+++KA  ICG+DVH       A   +K P  +GHE  G + ++G  V ++  GD V+ E  I C +C  C+ G  ++C E          G+ A  +  P    +    N+ LE  ++ EP
Sbjct:   23 EIPKIGPDEVLIKVKATSICGTDVHIYVWNEWAKSRIKPPKTMGHEFVGEVVEIGENVTSVKVGDLVSAETHIVCGKCRACRTGNAHIC-ENTLILGVDTDGAFAEYIKVPESNVWINDKNIPLEILSIQEP 153          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_PARUW (L-threonine 3-dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=tdh PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.949e-14
Identity = 46/124 (37.10%), Postives = 65/124 (52.42%), Query Frame = 2
Query:  305 DVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            +VL++     ICG+DVH  K    A   V  P+VIGHE  G I + G  VK    G+RV  E  I C +C +C+ GR ++C   K      + G  A   V PA+  F LP ++S + GA+ +P
Sbjct:   28 EVLIKTIKTSICGTDVHIYKWDAWAQKNVPVPLVIGHEFIGEIAEFGKNVKGFKIGERVCGEGHIVCNQCPNCRMGRKHVCMHTKGLGY-HISGCFAEYFVLPAENVFSLPPSISDDLGAIFDP 150          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: DHSO_BACHD (Sorbitol dehydrogenase OS=Bacillus halodurans GN=gutB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.949e-14
Identity = 47/143 (32.87%), Postives = 66/143 (46.15%), Query Frame = 2
Query:  251 GVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGIS-CWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            G     +Q    P+ G + V +++K  G+CGSD+H  +      + V  P+ +GHE +G I ++G  V     GDRV  E   S C +C +C  G YNLC   K        GS A  V+   +    LP  V     AM EP
Sbjct:   10 GTGHFAVQEKPEPTPGKHQVKIKVKYTGVCGSDIHTYE----GHYPVAAPVTLGHEFSGEIVELGEGVTGFNVGDRVTSETTYSICGKCSYCTSGDYNLCSHRKGLGNQQ-DGSFAKYVIARQESLHHLPAGVDDRSAAMTEP 147          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_BACSU (L-threonine 3-dehydrogenase OS=Bacillus subtilis GN=tdh PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 41/131 (31.30%), Postives = 67/131 (51.15%), Query Frame = 2
Query:  284 LPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            +P +  ++VL+++KA  ICG+DVH     + A   +K P V GHE +G++E VG  V ++  G+ V+ E  I C  C  C  G+ ++C            G  A  V  PAD  ++ P ++     ++ EP
Sbjct:   25 IPEIDKHEVLIKVKAASICGTDVHIYNWDQWARQRIKTPYVFGHEFSGIVEGVGENVSSVKVGEYVSAETHIVCGECVPCLTGKSHVCTNTAIIGVDTA-GCFAEYVKVPADNIWRNPADMDPSIASIQEP 154          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_STRGG (L-threonine 3-dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=tdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 47/145 (32.41%), Postives = 69/145 (47.59%), Query Frame = 2
Query:  242 WLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            WLM V          P  GP DVL+++   GICG+D+H       A   V  P+++GHE  G +  +GS+V  +  GD V+ E  + C +C +C  GR +LC            G+ A  VV PA   +     V L+  A+ +P
Sbjct:   14 WLMDVPE--------PEYGPTDVLIKVLRTGICGTDLHIRAYDGWAQQAVTTPLILGHEFVGEVAAIGSDVADIATGDLVSGEGHLVCGKCRNCLAGRRHLCRSTVGLGVGR-DGAFAEYVVLPASNVWVHRVPVDLDIAAIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_RHILO (L-threonine 3-dehydrogenase OS=Rhizobium loti GN=tdh PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 2
Query:  284 LPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            +P +GP DVL++++   ICG+DVH     + A   V  PMV GHE  G +   G+ V     G RV+ E  I C  C +C+ GR +LC   +      P  G+    +  P      +PD+V  E  A+ +P
Sbjct:   24 VPEIGPNDVLIKIRKTAICGTDVHIYNWDQWAQKTVPVPMVTGHEFVGTVADFGAAVTEYKVGQRVSGEGHIVCGHCRNCRAGRGHLCRNTLGVGVNRP--GAFGEYLAIPQHNVVPIPDDVPDEIAAIFDP 153          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: BDHA_BACSU ((R,R)-butanediol dehydrogenase OS=Bacillus subtilis GN=bdhA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 50/148 (33.78%), Postives = 74/148 (50.00%), Query Frame = 2
Query:  263 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKE----------PMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            ++I+  E P   P  V +++K  GICGSD+H  + L    F+  +          P+ +GHE +G + +VG  V+    GDRV +EP  +     H   G YNL  +M F       G  +  V    +L FKLPD +S E+GA+ EP
Sbjct:   12 IRIEHIEEPKTEPGKVKIKVKWCGICGSDLH--EYLGGPIFIPVDKPHPLTNETAPVTMGHEFSGEVVEVGEGVENYKVGDRVVVEPIFAT----HGHQGAYNLDEQMGFLGLAGGGGGFSEYVSVDEELLFKLPDELSYEQGALVEP 153          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_SILPO (L-threonine 3-dehydrogenase OS=Silicibacter pomeroyi GN=tdh PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.449e-13
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = 2
Query:  284 LPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            +P +GP DVL+++K  GICG+D+H       A   V  PM+ GHE AG I ++G +V  L  G RV+ E  +        + G+++L P  +      V G+ A  +  PA     LP+++  E GA+ +P
Sbjct:   20 VPEIGPDDVLIKIKKTGICGTDIHIWNWDEWAAHTVPVPMITGHEFAGEIVELGRDVTGLSIGQRVSGEGHLIGTESRQSRAGKFHLDPGTRGIGV-NVQGAFAQYLRLPAFNVVPLPEDIPDEIGAILDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_BACLD (L-threonine 3-dehydrogenase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 42/131 (32.06%), Postives = 66/131 (50.38%), Query Frame = 2
Query:  284 LPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            +P +  ++VL+++KA  ICG+DVH       A   VK P V GHE +G + +VG  V T+  G+ V+ E  I C +C  C  G+ ++C +          G  A  V  PA   +K P  +  +  ++ EP
Sbjct:   24 IPKIDKHEVLIKVKAASICGTDVHIYNWDEWAKSRVKPPYVFGHEFSGEVVQVGENVTTVKEGEYVSAETHIVCGKCLPCLTGKEHVCKKTLILGV-DTDGCFAEYVKMPAANIWKNPAGMPEDLASIQEP 153          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: IDND_ECOLI (L-idonate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=idnD PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.437e-12
Identity = 40/126 (31.75%), Postives = 61/126 (48.41%), Query Frame = 2
Query:  311 LVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFAT----PPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            LV++   GICGSD+H+ +  ++ +F++K PMV+GHE  G +  + S+   L  G  VA+ P   C  C +C     N C +M+FF +    P V G      +     C   P     +  A  EP
Sbjct:   31 LVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKV--IHSDSSELHEGQTVAINPSKPCGHCKYCIEHNENQCTDMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEP 154          
The following BLAST results are available for this feature:
BLAST of FC868624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
TDH_THETN9.949e-1431.82L-threonine 3-dehydrogenase OS=Thermoanaerobacter ... [more]
TDH_PARUW9.949e-1437.10L-threonine 3-dehydrogenase OS=Protochlamydia amoe... [more]
DHSO_BACHD9.949e-1432.87Sorbitol dehydrogenase OS=Bacillus halodurans GN=g... [more]
TDH_BACSU1.697e-1331.30L-threonine 3-dehydrogenase OS=Bacillus subtilis G... [more]
TDH_STRGG2.895e-1332.41L-threonine 3-dehydrogenase OS=Streptomyces griseu... [more]
TDH_RHILO2.895e-1333.33L-threonine 3-dehydrogenase OS=Rhizobium loti GN=t... [more]
BDHA_BACSU2.895e-1333.78(R,R)-butanediol dehydrogenase OS=Bacillus subtili... [more]
TDH_SILPO6.449e-1333.59L-threonine 3-dehydrogenase OS=Silicibacter pomero... [more]
TDH_BACLD8.423e-1332.06L-threonine 3-dehydrogenase OS=Bacillus lichenifor... [more]
IDND_ECOLI1.437e-1231.75L-idonate 5-dehydrogenase OS=Escherichia coli (str... [more]

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Properties
Property NameValue
Genbank descriptionC31002G07EF AbioticL1 Citrus clementina cDNA clone C31002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868624 ID=FC868624; Name=FC868624; organism=Citrus clementina; type=EST; length=676bp
TATGCCGGGGAGAAACAATAATCTACACGGTCAAATAAAAAGAACACTTG
ATGTTATGCTAAACTTGTCATTAAATATTCCTGCGACCGAATCAAATCAT
ATCCAATATCCAGAATCAGATAGTGTACAGAGTGAAGTCTCTGCTGTGCA
CTTGTGTTTTGAAGGGTGAAAAGCAAATATGGGCAAAGGAGGGATGTCGC
AAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATG
GGTGTCAACACCCTCAAGATTCAGCCTTTTGAGCTTCCTTCTCTGGGACC
ATATGATGTTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATG
TGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGCCT
ATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGA
GGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGATCA
GCTGCTGGCGATGTGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCA
GAGATGAAATTTTTTGCAACTCCGCCAGTTCATGGTTCTCTGGCTAATCA
GGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCC
TGGAGGAAGGGGCTATGTGTGAGCCC
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