FC868624

Overview
NameFC868624
Unique NameFC868624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: ADH_SULTO (NAD-dependent alcohol dehydrogenase OS=Sulfolobus tokodaii GN=adh PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 43/122 (35.25%), Postives = 64/122 (52.46%), Query Frame = 2
Query:  263 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHFLK----TLRLA-DFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHP 613
            LK++   +P      VL++++A G+C SDVH  +     LR+  D  VK P+ +GHE AG IE+VG EV     GD VA+ P      C +C+ G  +LC   ++       G+ A  V+ P
Sbjct:   13 LKLEDIPIPKPKGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGRIEEVGDEVVGYSKGDLVAVNPWEGEGNCYYCRIGEEHLCDSPRWLGI-NYDGAYAEYVLVP 133          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: ADH6_PERMA (Alcohol dehydrogenase 6 OS=Peromyscus maniculatus GN=ADH6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 33/89 (37.08%), Postives = 51/89 (57.30%), Query Frame = 2
Query:  305 DVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFAT 571
            +V V+M A GICG+D+  L   +LA F    P+++GHE  G++E VG  V T+  GD+V +     C  C+ C   + N+C E++   T
Sbjct:   36 EVRVKMVAAGICGTDIKSLDNKKLAPFC---PIIMGHEGTGIVESVGEGVSTVKTGDKVIILCLPQCGECNTCLNSKNNICKEVRLSGT 121          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: YJJN_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yjjN OS=Escherichia coli (strain K12) GN=yjjN PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 42/133 (31.58%), Postives = 66/133 (49.62%), Query Frame = 2
Query:  281 ELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLP-DNVSLEEGAMCEP 676
            E+P  G  + L+++K+VGICG+D+H     +        P V+GHE  G I  +G  +  L  G +VA+ P ++C +C  CK GR N C ++         G      V  A++   LP D +  +  A+ EP
Sbjct:   21 EIPIPGDNEALIKIKSVGICGTDIHAWGGNQP---FFSYPRVLGHEICGEIVGLGKNIADLKNGQQVAVIPYVACQQCPACKSGRTNCCEKISVIGVHQDGGFSEYLSVPVANI---LPADGIDPQAAALIEP 147          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: ADH_SULSO (NAD-dependent alcohol dehydrogenase OS=Sulfolobus solfataricus GN=adh PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 43/122 (35.25%), Postives = 63/122 (51.64%), Query Frame = 2
Query:  263 LKIQPFELPSLGPYDVLVRMKAVGICGSDVHFLK----TLRLA-DFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHP 613
            L +Q   +P      VL++++A G+C SDVH  +     LR+  D  VK P+ +GHE AG IE+VG EV     GD VA+ P      C +C+ G  +LC   ++       G+ A  V+ P
Sbjct:   13 LSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGI-NFDGAYAEYVIVP 133          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: ADH_SCHPO (Alcohol dehydrogenase OS=Schizosaccharomyces pombe GN=adh1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 46/145 (31.72%), Postives = 75/145 (51.72%), Query Frame = 2
Query:  251 GVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVV--KEPMVIGHECAGVIEKVGSEVKTLVPGDRVALE-PGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGA--MC 670
            G   +K +   +   G  +VLV +K  G+C +D+H L+     D+ +  K P++ GHE AGV+ KVG+ V  L  GDRV ++    SC  C++C      +CP ++  +   V G+  +  +  A     +P++V LE  A  MC
Sbjct:   17 GPENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQ----GDWPLPAKMPLIGGHEGAGVVVKVGAGVTRLKIGDRVGVKWMNSSCGNCEYCMKAEETICPHIQ-LSGYTVDGTFQHYCIANATHATIIPESVPLEVAAPIMC 156          
The following BLAST results are available for this feature:
BLAST of FC868624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
ADH_SULTO4.622e-1135.25NAD-dependent alcohol dehydrogenase OS=Sulfolobus ... [more]
ADH6_PERMA4.622e-1137.08Alcohol dehydrogenase 6 OS=Peromyscus maniculatus ... [more]
YJJN_ECOLI7.883e-1131.58Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
ADH_SULSO7.883e-1135.25NAD-dependent alcohol dehydrogenase OS=Sulfolobus ... [more]
ADH_SCHPO7.883e-1131.72Alcohol dehydrogenase OS=Schizosaccharomyces pombe... [more]

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Properties
Property NameValue
Genbank descriptionC31002G07EF AbioticL1 Citrus clementina cDNA clone C31002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868624 ID=FC868624; Name=FC868624; organism=Citrus clementina; type=EST; length=676bp
TATGCCGGGGAGAAACAATAATCTACACGGTCAAATAAAAAGAACACTTG
ATGTTATGCTAAACTTGTCATTAAATATTCCTGCGACCGAATCAAATCAT
ATCCAATATCCAGAATCAGATAGTGTACAGAGTGAAGTCTCTGCTGTGCA
CTTGTGTTTTGAAGGGTGAAAAGCAAATATGGGCAAAGGAGGGATGTCGC
AAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATG
GGTGTCAACACCCTCAAGATTCAGCCTTTTGAGCTTCCTTCTCTGGGACC
ATATGATGTTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATG
TGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGCCT
ATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGA
GGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGATCA
GCTGCTGGCGATGTGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCA
GAGATGAAATTTTTTGCAACTCCGCCAGTTCATGGTTCTCTGGCTAATCA
GGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCC
TGGAGGAAGGGGCTATGTGTGAGCCC
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