FC868624

Overview
NameFC868624
Unique NameFC868624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_PHOLL (L-threonine 3-dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=tdh PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.288e-18
Identity = 50/130 (38.46%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  287 PSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            P LG  DV+++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S E  A+ +P
Sbjct:   21 PELGHNDVMIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFKIGDRVSGEGHITCGYCRNCRGGRTHLCRNTIGVGVNRA-GCFAQYLVIPAFNAFKIPDNISDELAAIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: DHSO_PIG (Sorbitol dehydrogenase (Fragment) OS=Sus scrofa GN=SORD PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.288e-18
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  230 NMAAWLMGVNTLKIQPFELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPG 496
            N++  + G   L+++ + +P  GP  VL++M +VGICGSDVH+ +  R+ +FVVK+PMV+GHE +G   KVGS V  L PGDR A EPG
Sbjct:    8 NLSLVVHGPGDLRLENYPIPEPGPNXVLLKMHSVGICGSDVHYWQHGRIGNFVVKKPMVLGHEASGTXVKVGSLVTHLKPGDRXAXEPG 96          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_ECOLI (L-threonine 3-dehydrogenase OS=Escherichia coli (strain K12) GN=tdh PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.989e-18
Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 2
Query:  284 LPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            +P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  A+ +P
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLAAIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_ECODH (L-threonine 3-dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.989e-18
Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 2
Query:  284 LPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            +P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  A+ +P
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLAAIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_ECOBW (L-threonine 3-dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.989e-18
Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 2
Query:  284 LPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            +P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  A+ +P
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLAAIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_ECO24 (L-threonine 3-dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.989e-18
Identity = 49/132 (37.12%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  284 LPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            +P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK  + GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFMIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_AERS4 (L-threonine 3-dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=tdh PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.989e-18
Identity = 51/131 (38.93%), Postives = 72/131 (54.96%), Query Frame = 2
Query:  287 PSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            P LG  D+L++++   ICG+D+H       A   +  PMV+GHE  G +  VG EV+    GDRV+ E  I+C  C +C+ GR +LC   +      P  GS A  +V PA   FKLPDN+  E  A+ +P
Sbjct:   21 PELGHNDLLIKIRKTAICGTDMHIYNWDEWAQKTIPVPMVVGHEYVGEVVAVGQEVRGFAVGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRP--GSFAEYLVIPAFNAFKLPDNIPDELAAIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_PSEA6 (L-threonine 3-dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=tdh PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.903e-18
Identity = 45/132 (34.09%), Postives = 74/132 (56.06%), Query Frame = 2
Query:  281 ELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            E+P++G  D+L++++   ICG+D+H       +   +  PMV+GHE  G + ++G EV+    GDRV+ E  I+C  C +C+ GR +LC            G+ A  +  PA   FK+PDN+S +  A+ +P
Sbjct:   19 EMPTVGHNDILIKIRKTAICGTDMHIYNWDEWSQNTIPVPMVVGHEYVGEVVEIGEEVRGFAIGDRVSGEGHITCGHCRNCRAGRRHLCRNTSGVGVNRA-GAFAEYLSIPAFNAFKIPDNISDDLAAIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_SHISS (L-threonine 3-dehydrogenase OS=Shigella sonnei (strain Ss046) GN=tdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.658e-18
Identity = 49/132 (37.12%), Postives = 74/132 (56.06%), Query Frame = 2
Query:  284 LPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            +P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_SHIFL (L-threonine 3-dehydrogenase OS=Shigella flexneri GN=tdh PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.658e-18
Identity = 49/132 (37.12%), Postives = 74/132 (56.06%), Query Frame = 2
Query:  284 LPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            +P LG  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P
Sbjct:   20 VPELGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNRP--GCFAEYLVIPAFNAFKIPDNISDDLASIFDP 149          
The following BLAST results are available for this feature:
BLAST of FC868624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
TDH_PHOLL2.288e-1838.46L-threonine 3-dehydrogenase OS=Photorhabdus lumine... [more]
DHSO_PIG2.288e-1849.44Sorbitol dehydrogenase (Fragment) OS=Sus scrofa GN... [more]
TDH_ECOLI2.989e-1837.88L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECODH2.989e-1837.88L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECOBW2.989e-1837.88L-threonine 3-dehydrogenase OS=Escherichia coli (s... [more]
TDH_ECO242.989e-1837.12L-threonine 3-dehydrogenase OS=Escherichia coli O1... [more]
TDH_AERS42.989e-1838.93L-threonine 3-dehydrogenase OS=Aeromonas salmonici... [more]
TDH_PSEA63.903e-1834.09L-threonine 3-dehydrogenase OS=Pseudoalteromonas a... [more]
TDH_SHISS6.658e-1837.12L-threonine 3-dehydrogenase OS=Shigella sonnei (st... [more]
TDH_SHIFL6.658e-1837.12L-threonine 3-dehydrogenase OS=Shigella flexneri G... [more]

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Properties
Property NameValue
Genbank descriptionC31002G07EF AbioticL1 Citrus clementina cDNA clone C31002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868624 ID=FC868624; Name=FC868624; organism=Citrus clementina; type=EST; length=676bp
TATGCCGGGGAGAAACAATAATCTACACGGTCAAATAAAAAGAACACTTG
ATGTTATGCTAAACTTGTCATTAAATATTCCTGCGACCGAATCAAATCAT
ATCCAATATCCAGAATCAGATAGTGTACAGAGTGAAGTCTCTGCTGTGCA
CTTGTGTTTTGAAGGGTGAAAAGCAAATATGGGCAAAGGAGGGATGTCGC
AAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATG
GGTGTCAACACCCTCAAGATTCAGCCTTTTGAGCTTCCTTCTCTGGGACC
ATATGATGTTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATG
TGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGCCT
ATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGA
GGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGATCA
GCTGCTGGCGATGTGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCA
GAGATGAAATTTTTTGCAACTCCGCCAGTTCATGGTTCTCTGGCTAATCA
GGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCC
TGGAGGAAGGGGCTATGTGTGAGCCC
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