FC868624

Overview
NameFC868624
Unique NameFC868624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_THET2 (L-threonine 3-dehydrogenase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.696e-18
Identity = 49/131 (37.40%), Postives = 71/131 (54.20%), Query Frame = 2
Query:  284 LPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            +P  GP ++LVR++A  ICG+D+H  K    A   ++ P+V GHE +GV+E VG  VK    GD V+LE  + C  C  C+ G Y++C   K        G  A  VV PA+  +  P ++  E  A+ EP
Sbjct:   20 VPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVKRPQVGDHVSLESHVVCHACPACRTGNYHVCLNTKILGVDR-DGGFAEYVVVPAENAWVNPKDLPFEVAAILEP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_AERHH (L-threonine 3-dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=tdh PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.696e-18
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 2
Query:  287 PSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            P LG  D+L++++   ICG+D+H       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+ GR +LC   +      P  G+ A  +V PA   FKLPDNV  E  A+ +P
Sbjct:   21 PELGHNDLLIKIRKTAICGTDIHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVRGFAVGDRVSGEGHITCGHCRNCRAGRTHLCRNTIGVGVNRP--GAFAEYLVIPAFNAFKLPDNVPDELAAIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_PYRKO (Probable L-threonine 3-dehydrogenase OS=Pyrococcus kodakaraensis GN=tdh PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.136e-17
Identity = 46/132 (34.85%), Postives = 74/132 (56.06%), Query Frame = 2
Query:  281 ELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            ++P  GP +VL+++ A  ICG+D+H  +    A   +K P ++GHE AG + +VG  V+ L  GD +++E  I C +C  CK  RY++C   K F    + G  A+  + PA   +K P ++  E  A+ EP
Sbjct:   23 DVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEDLQVGDYISVETHIVCGKCYACKHNRYHVCQNTKIFGV-DMDGVFAHYAIVPAKNAWKNPKDMPPEYAALQEP 153          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_SALTI (L-threonine 3-dehydrogenase OS=Salmonella typhi GN=tdh PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  287 PSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_PYRFU (Probable L-threonine 3-dehydrogenase OS=Pyrococcus furiosus GN=tdh PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17
Identity = 46/132 (34.85%), Postives = 72/132 (54.55%), Query Frame = 2
Query:  281 ELPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            ++P  GP +VL+++ A  ICG+D+H  +    A   ++ P ++GHE AG + +VG  V+ +  GD V++E  I C +C  CK G+Y++C   K F      G  A   V PA   +K P N+  E   + EP
Sbjct:   23 DVPKPGPGEVLIKILATSICGTDLHIYEWNEWAQTRIRPPQIMGHEVAGEVVEVGPGVEGIEVGDYVSVETHIVCGKCYACKRGQYHVCQNTKIFGV-DTDGVFAEYAVVPAQNVWKNPKNIPPEYATLQEP 153          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_CITK8 (L-threonine 3-dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=tdh PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 2
Query:  284 LPSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            +P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC   +      P  G  A  +V PA   FK+PDN+S +  ++ +P
Sbjct:   20 VPEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFRIGDRVSGEGHITCGHCRNCRGGRTHLCRNTLGVGVNRP--GCFAEYLVLPAFNAFKIPDNISDDLASIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_VIBPA (L-threonine 3-dehydrogenase OS=Vibrio parahaemolyticus GN=tdh PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.937e-17
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  287 PSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            P +G  D+L+++K   ICG+DVH       +   +  PMV+GHE  G +  +G EV+    GDRV+ E  I+C  C +C+GGR +LC            G+ A  +V PA   FK+PD +S +  ++ +P
Sbjct:   23 PEVGHNDILIKIKKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVRGFEIGDRVSGEGHITCGHCRNCRGGRTHLCRNTIGVGVNR-EGAFAEYLVIPAFNAFKIPDEISDDLASIFDP 151          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_SALAR (L-threonine 3-dehydrogenase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=tdh PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.937e-17
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  287 PSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_ENTS8 (L-threonine 3-dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=tdh PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.937e-17
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  287 PSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDP 149          
BLAST of FC868624 vs. ExPASy Swiss-Prot
Match: TDH_ENT38 (L-threonine 3-dehydrogenase OS=Enterobacter sp. (strain 638) GN=tdh PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.937e-17
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  287 PSLGPYDVLVRMKAVGICGSDVHFLKTLRLADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEP 676
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDP 149          
The following BLAST results are available for this feature:
BLAST of FC868624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
TDH_THET28.696e-1837.40L-threonine 3-dehydrogenase OS=Thermus thermophilu... [more]
TDH_AERHH8.696e-1837.40L-threonine 3-dehydrogenase OS=Aeromonas hydrophil... [more]
TDH_PYRKO1.136e-1734.85Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_SALTI1.483e-1736.15L-threonine 3-dehydrogenase OS=Salmonella typhi GN... [more]
TDH_PYRFU1.483e-1734.85Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]
TDH_CITK81.483e-1736.36L-threonine 3-dehydrogenase OS=Citrobacter koseri ... [more]
TDH_VIBPA1.937e-1735.38L-threonine 3-dehydrogenase OS=Vibrio parahaemolyt... [more]
TDH_SALAR1.937e-1736.15L-threonine 3-dehydrogenase OS=Salmonella arizonae... [more]
TDH_ENTS81.937e-1736.15L-threonine 3-dehydrogenase OS=Enterobacter sakaza... [more]
TDH_ENT381.937e-1736.15L-threonine 3-dehydrogenase OS=Enterobacter sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionC31002G07EF AbioticL1 Citrus clementina cDNA clone C31002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868624 ID=FC868624; Name=FC868624; organism=Citrus clementina; type=EST; length=676bp
TATGCCGGGGAGAAACAATAATCTACACGGTCAAATAAAAAGAACACTTG
ATGTTATGCTAAACTTGTCATTAAATATTCCTGCGACCGAATCAAATCAT
ATCCAATATCCAGAATCAGATAGTGTACAGAGTGAAGTCTCTGCTGTGCA
CTTGTGTTTTGAAGGGTGAAAAGCAAATATGGGCAAAGGAGGGATGTCGC
AAGGAGAAAAGGAAGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATG
GGTGTCAACACCCTCAAGATTCAGCCTTTTGAGCTTCCTTCTCTGGGACC
ATATGATGTTTTAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATG
TGCATTTTCTCAAGACCTTGAGGCTTGCCGATTTTGTAGTGAAAGAGCCT
ATGGTGATCGGGCATGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGA
GGTGAAGACTTTGGTGCCCGGTGACCGTGTGGCCCTGGAACCAGGGATCA
GCTGCTGGCGATGTGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCA
GAGATGAAATTTTTTGCAACTCCGCCAGTTCATGGTTCTCTGGCTAATCA
GGTGGTGCATCCTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCC
TGGAGGAAGGGGCTATGTGTGAGCCC
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