FC868625

Overview
NameFC868625
Unique NameFC868625
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868625 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 1.831e-86
Identity = 153/180 (85.00%), Postives = 165/180 (91.67%), Query Frame = 1
Query:   73 VDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDFDAGAGRMGG 612
            +DE + T  D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNTM G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL IND DAGAGRMGG
Sbjct:   52 IDEKRNT--DKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGG 229          
BLAST of FC868625 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 318.161 bits (814), Expect = 2.391e-86
Identity = 158/189 (83.60%), Postives = 168/189 (88.89%), Query Frame = 1
Query:   55 FKITA---EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDFDAGAGRMGG 612
            FKI A   E++E++QT KDRWKGLAYD SDDQQDITRGKG VD LFQAPM  GTHYAVMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L IND DAGAGR+GG
Sbjct:   55 FKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAGRLGG 241          
BLAST of FC868625 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.078e-86
Identity = 149/181 (82.32%), Postives = 162/181 (89.50%), Query Frame = 1
Query:   70 EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDFDAGAGRMGG 612
            + D  KQT  DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG +CCL IND DAGAGRMGG
Sbjct:   63 DADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGG 243          
BLAST of FC868625 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 5.889e-85
Identity = 150/184 (81.52%), Postives = 165/184 (89.67%), Query Frame = 1
Query:   61 ITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDFDAGAGRMGG 612
            +  EVDE   TK+DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL IND DAGAGRMGG
Sbjct:   58 VAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGG 238          
BLAST of FC868625 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 285.034 bits (728), Expect = 2.243e-76
Identity = 136/184 (73.91%), Postives = 154/184 (83.70%), Query Frame = 1
Query:   61 ITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDFDAGAGRMGG 612
            +T +  EN++   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L IND + GAGRMGG
Sbjct:   54 MTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGG 237          
BLAST of FC868625 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.107e-62
Identity = 118/172 (68.60%), Postives = 136/172 (79.07%), Query Frame = 1
Query:  103 RWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDFDAGAGRMG 609
            RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG+MC L IND DAGAGRMG
Sbjct:   42 RWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMG 211          
BLAST of FC868625 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.019e-36
Identity = 73/106 (68.87%), Postives = 89/106 (83.96%), Query Frame = 1
Query:  289 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDFDAGAGR 603
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+   ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMIND DAGAGR
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGR 109          
BLAST of FC868625 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.330e-36
Identity = 73/106 (68.87%), Postives = 89/106 (83.96%), Query Frame = 1
Query:  289 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDFDAGAGR 603
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI   ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMIND DAGAGR
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGR 109          
BLAST of FC868625 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.522e-32
Identity = 88/165 (53.33%), Postives = 90/165 (54.55%), Query Frame = 1
Query:  112 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDFDAGAGRM 606
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGGK              MGINPIMMSAGELESGNAGEPA                 KMCCL IND DAGAGR+
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGGK--------------MGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRV 96          
BLAST of FC868625 vs. ExPASy Swiss-Prot
Match: RCA_VITSX (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.649e-12
Identity = 37/58 (63.79%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  436 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDFDAGAGRMG 609
            +MGINPIMMSAGELESGNAGEPA                 KMCCL IND DAGAGR+G
Sbjct:   15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIG 55          
The following BLAST results are available for this feature:
BLAST of FC868625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCAA_HORVU1.831e-8685.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU2.391e-8683.60Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC4.078e-8682.32Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN5.889e-8581.52Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL2.243e-7673.91Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE4.107e-6268.60Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC1.019e-3668.87Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP1.330e-3668.87Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY1.522e-3253.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_VITSX6.649e-1263.79Ribulose bisphosphate carboxylase/oxygenase activa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31002G08EF AbioticL1 Citrus clementina cDNA clone C31002G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868625 ID=FC868625; Name=FC868625; organism=Citrus clementina; type=EST; length=648bp
AGGAAGAAGAAGGTAAGCTCATCCATCCCCCCATCCAAGGTCCCTTCTGC
GAGCTTCAAGATTACTGCTGAAGTCGATGAGAACAAGCAGACCAAGAAGG
ACAGATGGAAGGGCCTTGCCTACGACGAATCTGATGACCAACAAGACATC
ACCAGAGGAAAAGGTGCTGTGGACTCTCTGTTCCAAGCCCCCATGGGAAC
CGGAACTCACTATGCTGTCATGAGTTCTTATGACTACATCAGCCAAGGTC
TCCGCACATACAACTTGGACAACACGATGGACGGTCTCTACATTGCCCCT
GCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGTCCCT
GCCCAACATCAAGGTTCCTCTCATCTTGGGTATTTGGGGAGGCAAAGGAC
AAGGAAAATCATTCCAATGTGAGCTTGTTTTCGCCAAGATGGGCATCAAC
CCAATTATGATGAGTGCCGGAGAATTGGAAAGTGGCAATGCTGGAGAACC
CGCTAAGTTGATCAGGCAGAGGTACCGTGAGGCAGCTGACATTATCAAGA
AGGGAAAAATGTGCTGCCTCATGATCAATGATTTTGATGCAGGAGCTGGT
CGTATGGGTGGCACCACCAGTACACAGTTAACAACCAAANTGGTTACG
back to top