FC868630

Overview
NameFC868630
Unique NameFC868630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.505e-48
Identity = 70/143 (48.95%), Postives = 91/143 (63.64%), Query Frame = 1
Query:  157 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGV--DLLN 579
            GT     G I++RE+FE +L +RN++ C A+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYC++RQ+                 +YYGRGPIQLT   NY R G+ +GV  DL+N
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-------------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVN 146          

HSP 2 Score: 71.633 bits (174), Expect = 6.505e-48
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 3
Query:  558 LGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            +G  LV +PDL+ATDP++SF++AIWFWMTAQ  KPSCH VII +  P
Sbjct:  140 VGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTP 186          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 7.060e-47
Identity = 66/137 (48.18%), Postives = 87/137 (63.50%), Query Frame = 1
Query:  157 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGV 567
            GT     G I++RE+FE +L +RN++ C A+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYC+++Q+                 +YYGRGPIQLT   NY R G+ +GV
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-------------RYYGRGPIQLTHQSNYERAGQGIGV 140          

HSP 2 Score: 70.4774 bits (171), Expect = 7.060e-47
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 3
Query:  558 LGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            +G  LV +PDL+ATDP++SFK+AIWFWMT Q  KPSCH VII +  P
Sbjct:  140 VGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTP 186          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 9.946e-46
Identity = 75/163 (46.01%), Postives = 94/163 (57.67%), Query Frame = 1
Query:  103 SAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLP----GQYYGRGPIQLTWNCNYLRCGEALGVDLL 576
            SA  CG G       +G    G  +  I+SR +F+ +L +RND  C A  FYTYDAF+ AA AFP F  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYC+  +    +           P     +YYGRGPIQL++N NY   G+A+G DLL
Sbjct:   61 SAAGCGGGGPTPPSGSG----GSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLL 219          

HSP 2 Score: 59.3066 bits (142), Expect = 9.946e-46
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            +++G  L+  PDL+A+D  +SF +A WFWMT Q PKPSCH V   +  P
Sbjct:  212 QAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTP 260          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.197e-44
Identity = 86/162 (53.09%), Postives = 107/162 (66.05%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G +   CG G  C  +  G      +L  +ISR  F+ +L +RND  C A+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYC++R+ +  +           PG QYYGRGPIQ++WN NY +CG A+GVDLLN
Sbjct:   52 GSTTDYCGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLN 211          

HSP 2 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEPIS 704
            R++G  L+  PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI     P S
Sbjct:  203 RAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSS 253          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.758e-44
Identity = 85/162 (52.47%), Postives = 106/162 (65.43%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G +   CG    C  +  G      +L  +ISR  F+ +L +RND  C A+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYC++R+ +  +           PG QYYGRGPIQ++WN NY +CG A+GVDLLN
Sbjct:   51 GSTTDYCGKD--CQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLN 210          

HSP 2 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEPIS 704
            R++G  L+  PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI     P S
Sbjct:  202 RAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSS 252          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.257e-43
Identity = 83/162 (51.23%), Postives = 107/162 (66.05%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G +++ CG G  C  + +G  + GG L  +IS + F ++L +RND  C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYC++R+ +  +            G QYYGRGPIQ++WN NY +CG A+GVDLLN
Sbjct:   45 GSTSEYCGDG--CQSQCSG-SSGGGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLN 203          

HSP 2 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEPIS 704
            R++G  L+ +PDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VI     P S
Sbjct:  195 RAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSS 245          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.596e-43
Identity = 69/141 (48.94%), Postives = 90/141 (63.83%), Query Frame = 1
Query:  157 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            GT    +G I++ ++F+ +L  RND RC A  FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   +P G YA GYC++R+ +             +   YYGRGPIQLT   NY   G+A+  DL+N
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQ------------MGNGYYGRGPIQLTGQSNYDLAGKAIEQDLVN 147          

HSP 2 Score: 62.3882 bits (150), Expect = 2.596e-43
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 3
Query:  570 LVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            LV +PDL+ATD  +SFK+AIWFWMT Q  KPSCH+VI     P
Sbjct:  145 LVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTP 187          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.948e-43
Identity = 88/163 (53.99%), Postives = 110/163 (67.48%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G +A  CGSG       TG      ++G++I+R MF D+L +RN+  C  +GFYTYDAFI AAKAFP FG +G+ T RKREIAAF AQT HETTGGW  AP G YAWGYCY+R Q S G+            G +YYGRGPIQ+++N NY + G+A+GVDL+N
Sbjct:   45 GNTADYCGSGCQSQCSSTG------DIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVN 201          

HSP 2 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            +++G  LV +PDL+ATD V+SFK+A WFWMT Q PKPSCH VI     P
Sbjct:  193 KAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTP 241          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.948e-43
Identity = 90/165 (54.55%), Postives = 109/165 (66.06%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTD--GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G +   CG G  C  +  G  T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R Q S G            PG +Y+GRGPIQ++ N NY  CG A+GVDLLN
Sbjct:   48 GNTNDYCGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLN 211          

HSP 2 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEPIS 704
            R++G  L+ +PDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII   +P S
Sbjct:  203 RAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSS 253          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.406e-43
Identity = 66/155 (42.58%), Postives = 92/155 (59.35%), Query Frame = 1
Query:  115 CGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLL 576
            C + ++     +G    G  +G +I++ +F  +LP R++ +C ARGFYTYDAFI AA +FPAFG SG    + +RE+AAFF QT HETTGG       ++ WGYC+  +++  +              YYGRGPIQLT   NY   G ALG+DL+
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATSP-----------PYYGRGPIQLTGQSNYQAAGNALGLDLV 154          

HSP 2 Score: 67.3958 bits (163), Expect = 4.406e-43
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 3
Query:  555 SLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            +LG  LV +PDL++TD V+SFK+AIWFWMTAQ  KPSCH+VI+    P
Sbjct:  148 ALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTP 195          
The following BLAST results are available for this feature:
BLAST of FC868630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIA_SOLCI6.505e-4848.95Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SOLLC7.060e-4748.18Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI12_ORYSJ9.946e-4646.01Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_PHAVU1.197e-4453.09Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU7.758e-4452.47Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_PEA2.257e-4351.23Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIT_PETHY2.596e-4348.94Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIB_VITVI2.948e-4353.99Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI2_TOBAC2.948e-4354.55Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI8_ORYSJ4.406e-4342.58Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionC31002H02EF AbioticL1 Citrus clementina cDNA clone C31002H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868630 ID=FC868630; Name=FC868630; organism=Citrus clementina; type=EST; length=709bp
CACCAAGTAAAGGATAATTGATATCATAACTCTTGCTTTCAAATGAGGCT
CATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACAAGGAG
GTTCAGCACAGAATTGTGGAAGCGGCGCTGTGTGCGGTGAACGTGATACT
GGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGAT
GTTTGAAGACTTGCTTCCGTATAGAAATGATGAACGATGCCATGCCAGAG
GCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCC
TTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTT
TTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTG
GTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCATGGG
TCCGACTACTGTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTA
TGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCG
GAGAAGCCTTGGGGGTGGACTTGTTGAACATCCAGACCTTCTTGCCACTG
ATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAG
CCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAAATGGAACCCAT
CAGCAATGA
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