FC868630

Overview
NameFC868630
Unique NameFC868630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:11..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.120e-42
Identity = 90/170 (52.94%), Postives = 109/170 (64.12%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTD-------GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G +   CG G  C  +  G  T        GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R Q S G            PG +Y+GRGPIQ++ N NY  CG A+GVDLLN
Sbjct:   48 GNTNDYCGPGN-CQSQCPGGPTPTPPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLN 216          

HSP 2 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            R++G  L+ +PDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII   +P
Sbjct:  208 RAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQP 256          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.120e-42
Identity = 87/164 (53.05%), Postives = 107/164 (65.24%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G +   C     C  + +G G D G L  +I+RE F+ +L +RND  C ARGFYTYDAFI AAK+FPAF  +G++  RKRE+AAF AQT HETTG  GW  AP G Y WGYCY R+++              PG QY+GRGP+QLTWN NY +CG A+GVDLLN
Sbjct:   46 GNTDDYCKKENGCQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNPADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLN 208          

HSP 2 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            R++G  L+ +PDLLATDP +SFKSA WFWMT Q PKPSCH+VII    P
Sbjct:  200 RAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSP 248          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.239e-41
Identity = 85/164 (51.83%), Postives = 105/164 (64.02%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G     C SG        G G  GG++G +IS  MF+ +L +RND  C  +  FY+Y+AFI AA++F  FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYC++R Q S G            PG +Y+GRGPIQ++ N NY  CG A+GVDLLN
Sbjct:   52 GKCQSQCPSGPSPKPPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLN 215          

HSP 2 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            R++G  L+ +PDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VII   +P
Sbjct:  207 RAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQP 255          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.618e-41
Identity = 82/156 (52.56%), Postives = 101/156 (64.74%), Query Frame = 1
Query:  118 GSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPG--QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G  + CG    G     G+L  IISR  F+D+L +RND  C ARGFYTYDAFI AAK+FP FG +G+   RK+EIAAFF QT HETTGGW  AP G Y+WGYC+ ++ +  S+               YYGRGP+QL+WN NY +CG A+G DLLN
Sbjct:   55 GCQSQCGGTPPG---PTGDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLN 207          

HSP 2 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            R++G  L+ +PDL++ DPV++FK+AIWFWMT Q PKPSCH VI+ + +P
Sbjct:  199 RAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQP 247          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.113e-41
Identity = 85/166 (51.20%), Postives = 107/166 (64.46%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTD---GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G +   CGSG  C  +  G G     GG+LG  IS  MF+ +L +RN+  C  + FY+Y+AFI AA++FP FG SG+   RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+  +  D           PG +Y+GRGPIQ++ N NY  CG A+GVDLLN
Sbjct:   51 GNTNDYCGSGN-CQSQCPGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLN 215          

HSP 2 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEPIS 704
            R++G  L+ +PDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VII    P S
Sbjct:  207 RAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSS 257          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.113e-41
Identity = 87/164 (53.05%), Postives = 107/164 (65.24%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G +   CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYC++R Q S G            PG +Y+GRGPIQ++ N NY  CG A+GVDLLN
Sbjct:   43 GDTNDYCGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLN 205          

HSP 2 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            R++G  L+ +PDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI    +P
Sbjct:  197 RAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQP 245          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 8.028e-41
Identity = 77/139 (55.40%), Postives = 96/139 (69.06%), Query Frame = 1
Query:  169 GELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPG--QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G+L  IIS   F+D+L +RND  C ARGFYTY+AFI AAK+FP FG +G+   RK+E+AAFF QT HETTGGW  AP G Y+WGYC+ ++ +  SD              +YYGRGP+QL+WN NY  CG A+GVDLLN
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLN 222          

HSP 2 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 30/49 (61.22%), Postives = 40/49 (81.63%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            R++G  L+ +PDL+A D V++FK+AIWFWMTAQPPKPSCH VI  + +P
Sbjct:  214 RAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQP 262          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.051e-40
Identity = 85/164 (51.83%), Postives = 105/164 (64.02%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G +   CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYC++R Q S G            PG +Y+GRGPIQ++ N NY  CG A+GVDLLN
Sbjct:   43 GNTNDYCGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLN 205          

HSP 2 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            R++G  L+ +PDL+ATD V+SFKSAIWFWMT Q PKPSCH+VI    +P
Sbjct:  197 RAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQP 245          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.984e-40
Identity = 84/164 (51.22%), Postives = 106/164 (64.63%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G + + CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AF+ AA +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYC++R Q S G            PG +Y+GRGPIQ++ N NY  CG A+GVDLLN
Sbjct:   47 GNTNEYCGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLN 209          

HSP 2 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            R++G  L+ +PDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VI    +P
Sbjct:  201 RAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQP 249          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.267e-40
Identity = 59/132 (44.70%), Postives = 80/132 (60.61%), Query Frame = 1
Query:  190 SREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLP--GQYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            +  MFE +LP RN++ C  +GFYTYDA+  A + +P FG +G++  RKRE+AAFFAQT  ET+G         + WGYC + +++  SD          P    YYGRGP+QL WN NY  CG  LG +LL+
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLGQNLLD 199          

HSP 2 Score: 57.7658 bits (138), Expect = 7.267e-40
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 3
Query:  558 LGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEMEP 698
            LG  L++ P+ +ATDPVLSF++A+WFWM       PSCHEVI  E  P
Sbjct:  193 LGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSP 240          
The following BLAST results are available for this feature:
BLAST of FC868630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI1_TOBAC1.120e-4252.94Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_THECC1.120e-4253.05Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI4_SOLTU1.239e-4151.83Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_BRANA1.618e-4152.56Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_SOLTU2.113e-4151.20Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI1_SOLTU2.113e-4153.05Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHIB_ARATH8.028e-4155.40Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI3_SOLTU3.051e-4051.83Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC3.984e-4051.22Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI8_POPTR7.267e-4044.70Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]

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Properties
Property NameValue
Genbank descriptionC31002H02EF AbioticL1 Citrus clementina cDNA clone C31002H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868630 ID=FC868630; Name=FC868630; organism=Citrus clementina; type=EST; length=709bp
CACCAAGTAAAGGATAATTGATATCATAACTCTTGCTTTCAAATGAGGCT
CATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACAAGGAG
GTTCAGCACAGAATTGTGGAAGCGGCGCTGTGTGCGGTGAACGTGATACT
GGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGAT
GTTTGAAGACTTGCTTCCGTATAGAAATGATGAACGATGCCATGCCAGAG
GCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCC
TTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTT
TTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTG
GTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCATGGG
TCCGACTACTGTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTA
TGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCG
GAGAAGCCTTGGGGGTGGACTTGTTGAACATCCAGACCTTCTTGCCACTG
ATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAG
CCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAAATGGAACCCAT
CAGCAATGA
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