FC868630

Overview
NameFC868630
Unique NameFC868630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39
Identity = 85/174 (48.85%), Postives = 107/174 (61.49%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHG--------TDG---GELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G +   CG G    +  +G G        T G   G++  IIS  MF+ +L +RND  C  + FYTY+AFI AA++F  FG +G+ T RKRE+AAFFAQT HETTGGW  AP G YAWGYCY+R Q +  S           PGQ YYGRGPIQ+++N NY  CG A+G +LLN
Sbjct:   48 GNTQDYCGPGKCQSQCPSGPGPTPRPPTPTPGPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLN 221          

HSP 2 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            R++G  L+ +PDL+AT+ V+SFKSAIWFWMTAQ PKPSCH+VI     P
Sbjct:  213 RAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTP 261          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39
Identity = 85/164 (51.83%), Postives = 105/164 (64.02%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G +   CG G    +   G     G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R Q S G            PG +Y+GRGPIQ++ N NY  CG A+GVDLLN
Sbjct:   43 GNTNDYCGPGNCQSQCPGG---SPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLN 203          

HSP 2 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            R++G  L+ +PDL+ATD ++SFKSAIWFWMT Q PKPSCH+VI    +P
Sbjct:  195 RAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQP 243          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.609e-39
Identity = 64/143 (44.76%), Postives = 85/143 (59.44%), Query Frame = 1
Query:  151 GHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD--XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVD 570
            G+      +  I+S +++  L  +++D  C ARGFYTY +F+ AA  FP F  +G    RKRE+AAF AQ  HETTGGW  AP G YAWG CY  +++  S             PG+ Y+GRGPIQ++WN NY   G+ALG D
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFD 183          

HSP 2 Score: 51.2174 bits (121), Expect = 1.609e-39
Identity = 19/49 (38.78%), Postives = 35/49 (71.43%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            ++LG   + +P+++A    ++F++A+WFWMT +  KPSCH+V++ E  P
Sbjct:  178 QALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRP 226          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 89/165 (53.94%), Postives = 106/165 (64.24%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G  +Q  GSG   G          G L  +ISRE F  +L +RND  C ARGFYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTG  GW  AP G YAWGYCY R+++  S            PG QY+GRGP+QL+WN NY +CG A+GVDLLN
Sbjct:   35 GCQSQCSGSGPAPGP---------GGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLN 189          

HSP 2 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEPISN 707
            R++G  L+ +PDLL++DP +SFKSA WFWMT Q PKPSCH VII    P S+
Sbjct:  181 RAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSS 232          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 89/165 (53.94%), Postives = 106/165 (64.24%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G  +Q  GSG   G          G L  +ISRE F  +L +RND  C ARGFYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTG  GW  AP G YAWGYCY R+++  S            PG QY+GRGP+QL+WN NY +CG A+GVDLLN
Sbjct:   57 GCQSQCSGSGPAPGP---------GGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLN 211          

HSP 2 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEPISN 707
            R++G  L+ +PDLL++DP +SFKSA WFWMT Q PKPSCH VII    P S+
Sbjct:  203 RAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSS 254          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.405e-39
Identity = 86/173 (49.71%), Postives = 111/173 (64.16%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G ++  CG G  C  + +G G          +DG  +G I+ R++FE LL +RND  C ARGFYTY+AF+ AA AFPAFG +GN   RKRE+AAF  QT HETTGGWP AP G ++WGYC+ ++ +  SD           PG +YYGRGPIQL++N NY   G A+GVDLL+
Sbjct:   57 GTTSDFCGDG--CQSQCSGCGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLS 225          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.575e-38
Identity = 63/134 (47.01%), Postives = 79/134 (58.96%), Query Frame = 1
Query:  175 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLL 576
            +  +IS  +FE +L +R        GFYTYDAFI AAK+FPAF  +G+  +RKRE+AAF AQT HETTGGWP AP G Y  G                         Y+GRGPIQ+++N NY   G+A+GVDLL
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG---------------------STSDYFGRGPIQISYNYNYGAAGKAIGVDLL 105          

HSP 2 Score: 59.3066 bits (142), Expect = 6.575e-38
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEPIS 704
            +++G  L+ +PDL+ +D  + FK+A+WFWMT Q PKPS H+VI     P S
Sbjct:   98 KAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSS 148          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.851e-37
Identity = 79/172 (45.93%), Postives = 107/172 (62.21%), Query Frame = 1
Query:   97 GGSAQNCGSGAV------CGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLP----GQYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G ++  CG+G        CG   T   + GG  +  IIS  +F+ +L +RND+ C A+GFYTYDAF+ AA A+P F  +G+    KRE+AAF AQT HETTGGWP AP G Y+WGYC+ ++ ++G+           P     +YYGRGPIQ+T+N NY   G+A+G DLLN
Sbjct:   43 GSTSDYCGAGCQSQCSGGCGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCF-KEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLN 213          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.186e-37
Identity = 69/169 (40.83%), Postives = 91/169 (53.85%), Query Frame = 1
Query:   94 QGGSAQNCGSGAVCGERD------TGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLL 576
            +GG    C      G+ D      T  G     +  +++ + FE +LP+R+D  C ARGFY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT H T+       GG Y+WGYCY       SD           PG+ Y+ RGP+Q+ +N NY   GEA+G DLL
Sbjct:   64 KGGCQSQCRVSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLL 225          

HSP 2 Score: 53.5286 bits (127), Expect = 3.186e-37
Identity = 22/49 (44.90%), Postives = 36/49 (73.47%), Query Frame = 3
Query:  555 SLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEMEP 698
            ++G  L+ +P+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +  P
Sbjct:  219 AIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTP 267          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.186e-37
Identity = 69/169 (40.83%), Postives = 91/169 (53.85%), Query Frame = 1
Query:   94 QGGSAQNCGSGAVCGERD------TGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLL 576
            +GG    C      G+ D      T  G     +  +++ + FE +LP+R+D  C ARGFY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT H T+       GG Y+WGYCY       SD           PG+ Y+ RGP+Q+ +N NY   GEA+G DLL
Sbjct:   64 KGGCQSQCRVSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLL 225          

HSP 2 Score: 53.5286 bits (127), Expect = 3.186e-37
Identity = 22/49 (44.90%), Postives = 36/49 (73.47%), Query Frame = 3
Query:  555 SLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEMEP 698
            ++G  L+ +P+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +  P
Sbjct:  219 AIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTP 267          
The following BLAST results are available for this feature:
BLAST of FC868630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI3_TOBAC1.159e-3948.85Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_SOLTU1.159e-3951.83Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI10_ORYSJ1.609e-3944.76Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI2_GOSHI1.977e-3953.94Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI1.977e-3953.94Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI2_ORYSJ4.405e-3949.71Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_AVESA6.575e-3847.01Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI3_ORYSJ1.851e-3745.93Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSJ3.186e-3740.83Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI3.186e-3740.83Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]

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Properties
Property NameValue
Genbank descriptionC31002H02EF AbioticL1 Citrus clementina cDNA clone C31002H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868630 ID=FC868630; Name=FC868630; organism=Citrus clementina; type=EST; length=709bp
CACCAAGTAAAGGATAATTGATATCATAACTCTTGCTTTCAAATGAGGCT
CATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACAAGGAG
GTTCAGCACAGAATTGTGGAAGCGGCGCTGTGTGCGGTGAACGTGATACT
GGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGAT
GTTTGAAGACTTGCTTCCGTATAGAAATGATGAACGATGCCATGCCAGAG
GCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCC
TTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTT
TTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTG
GTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCATGGG
TCCGACTACTGTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTA
TGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCG
GAGAAGCCTTGGGGGTGGACTTGTTGAACATCCAGACCTTCTTGCCACTG
ATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAG
CCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAAATGGAACCCAT
CAGCAATGA
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