FC868630

Overview
NameFC868630
Unique NameFC868630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.263e-35
Identity = 78/173 (45.09%), Postives = 104/173 (60.12%), Query Frame = 1
Query:   97 GGSAQNCGSGAV------CGERDTGHGTDGGELG--KIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSH--GSDXXXXXXXXXLPG--QYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G ++  CGSG        CG       + GG  G   I+SR +F+ +L +RND  C A+ FYTYDAF+ AA AFP+F  +G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYC+  + +   GSD              +YYGRGPIQ+++N NY   G+A+G +LL+
Sbjct:   45 GSTSAYCGSGCQSQCSGSCGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLS 217          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.994e-32
Identity = 68/141 (48.23%), Postives = 94/141 (66.67%), Query Frame = 1
Query:  157 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            G+   ++G I++ ++F ++L  RND+RC A+GFYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   A  G +A GYC++R+ +             +   +YGRGPIQLT   NY   G+A+G DL+N
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQ------------MGSGFYGRGPIQLTGQSNYDLAGQAIGQDLVN 140          

HSP 2 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEMEP 698
            +++G  LV +PDL+ATD  +SFK+AIWFWMTAQ  KPSCH+VI  +  P
Sbjct:  132 QAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTP 180          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 3.847e-31
Identity = 59/164 (35.98%), Postives = 87/164 (53.05%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERD--TGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVS-HGSDXXXXXXXXXLPGQYYG-RGPIQLTWNCNYLRCGEALGVDLL 576
            G   Q   S +V G R   +G+ T       +++  +F+ +  +R D  C ++GFY+Y +F+ AA++FPAFG  G+   RKRE+AAF A     T+G   D     +AWG C+I   +   +D           G+ Y  RGPIQLT N NY   G+A+G DL+
Sbjct:  102 GSKCQYRCSSSVRGPRVALSGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVE-NPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLI 262          

HSP 2 Score: 61.2326 bits (147), Expect = 3.847e-31
Identity = 20/45 (44.44%), Postives = 37/45 (82.22%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIID 686
            +++G  L+++PDL+  DP++SFK+A+WFWM+    KPSCH+++++
Sbjct:  255 QAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVLN 299          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.376e-30
Identity = 66/135 (48.89%), Postives = 85/135 (62.96%), Query Frame = 1
Query:  175 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            +G I++ ++F ++L  RND RC A GFYTYDAFI AA +FP FG SG++T R++EIAAFF QT HETTGG   A    +  GYC++RQ                  +YYGRGPIQLT   NY + G A+  DL+N
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-------------RYYGRGPIQLTNQNNYEKAGNAIRQDLVN 146          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.327e-30
Identity = 65/135 (48.15%), Postives = 86/135 (63.70%), Query Frame = 1
Query:  175 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLN 579
            +G I++ ++F ++L  RND RC A GFYTYDAFI AA +FP FG +G++T R++EIAAFF QT HETTGG   A    +  GYC++RQ                  +YYGRGPIQLT   NY + G A+G +L+N
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-------------RYYGRGPIQLTNRNNYEKAGTAIGQELVN 146          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.050e-29
Identity = 60/105 (57.14%), Postives = 70/105 (66.67%), Query Frame = 1
Query:  118 GSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYI 432
            G G   G    G G   G L  II   MF+D+L YRND +C A GFYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HET G WP A G +Y WGYC++
Sbjct:   66 GGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM 170          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 6.368e-24
Identity = 58/162 (35.80%), Postives = 82/162 (50.62%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVD 570
            G  +  CG+G   G  D    T+   +  I++ E F  L+  + D+ C A+GFYT DAF+ AA  +P+FG +G+    KREIAAFFA   HET               +CYI ++   S           P      YYGRGP+Q++WN NY   G+++G D
Sbjct:   43 GTGSDYCGTGCQAGPCDVP-ATNDVSVASIVTPEFFAALVA-QADDGCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFD 189          

HSP 2 Score: 33.113 bits (74), Expect = 6.368e-24
Identity = 12/29 (41.38%), Postives = 21/29 (72.41%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFW 638
            +S+G   +  PD +A  PVL+F++A+W+W
Sbjct:  184 QSIGFDGLGDPDAVARSPVLAFQTALWYW 212          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 9.474e-22
Identity = 57/168 (33.93%), Postives = 80/168 (47.62%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTD----GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLL 576
            G +   CG+G   G   +  GT     GG +G I+++  F  ++       C  + FYT D+FI AA  FP F NS    + +REIA  FA   HET               +CYI +++  S           P      Y+GRGPIQL+WN NY  CG++L ++LL
Sbjct:   42 GSTDAYCGTGCRSGPCRSPGGTPSPPGGGSVGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMFAHFTHETGH-------------FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLL 191          

HSP 2 Score: 36.1946 bits (82), Expect = 9.474e-22
Identity = 12/35 (34.29%), Postives = 25/35 (71.43%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTAQPP 656
            +SL   L+  P+L++++P ++F++ +WFWM +  P
Sbjct:  184 QSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP 218          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.529e-21
Identity = 51/166 (30.72%), Postives = 76/166 (45.78%), Query Frame = 1
Query:   97 GGSAQNCGSGAVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS---DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVD 570
            G + + CG G   G   +G G  G       +  +++   F  +   +    C  + FYT  AF+ A K +P F + G++   KREIAAFFA   HET               +CYI +++  +   D            +YYGRGP+Q++WN NY   G A+G D
Sbjct:   38 GTTDEYCGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGI-KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFD 189          

HSP 2 Score: 33.4982 bits (75), Expect = 3.529e-21
Identity = 13/32 (40.62%), Postives = 22/32 (68.75%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWMTA 647
            R++G   +  P  +A D V++FK+A+WFWM +
Sbjct:  184 RAIGFDGLGDPGRVARDAVVAFKAALWFWMNS 215          
BLAST of FC868630 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.362e-20
Identity = 48/152 (31.58%), Postives = 69/152 (45.39%), Query Frame = 1
Query:  118 GSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS---DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALG 564
            G G   G    G G+ G  +  +++   F  +   +    C  + FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +CYI +++  +   D            +YYGRGP+Q++WN NY   G  +G
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGI-KNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIG 198          

HSP 2 Score: 34.6538 bits (78), Expect = 6.362e-20
Identity = 13/30 (43.33%), Postives = 21/30 (70.00%), Query Frame = 3
Query:  552 RSLGGGLVEHPDLLATDPVLSFKSAIWFWM 641
            R +G   +  P+ +A D V++FK+A+WFWM
Sbjct:  195 RDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          
The following BLAST results are available for this feature:
BLAST of FC868630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI1_ORYSJ2.263e-3545.09Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_SOLLC3.994e-3248.23Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
AGI_URTDI3.847e-3135.98Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIP_TOBAC6.376e-3048.89Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIQ_TOBAC8.327e-3048.15Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIB_POPTR7.050e-2957.14Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI6_ORYSJ6.368e-2435.80Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA9.474e-2233.93Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIB_MAIZE3.529e-2130.72Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE6.362e-2031.58Endochitinase A OS=Zea mays PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC31002H02EF AbioticL1 Citrus clementina cDNA clone C31002H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868630 ID=FC868630; Name=FC868630; organism=Citrus clementina; type=EST; length=709bp
CACCAAGTAAAGGATAATTGATATCATAACTCTTGCTTTCAAATGAGGCT
CATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACAAGGAG
GTTCAGCACAGAATTGTGGAAGCGGCGCTGTGTGCGGTGAACGTGATACT
GGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGAT
GTTTGAAGACTTGCTTCCGTATAGAAATGATGAACGATGCCATGCCAGAG
GCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCC
TTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTT
TTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTG
GTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTTAGCCATGGG
TCCGACTACTGTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTA
TGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCG
GAGAAGCCTTGGGGGTGGACTTGTTGAACATCCAGACCTTCTTGCCACTG
ATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAG
CCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAAATGGAACCCAT
CAGCAATGA
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