FC868633
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868633 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.435e-28 Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 1 Query: 493 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLR 681 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL+++ Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 214
BLAST of FC868633 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.435e-28 Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 1 Query: 493 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLR 681 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL+++ Sbjct: 152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 214
BLAST of FC868633 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.435e-28 Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 1 Query: 493 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLR 681 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL+++ Sbjct: 1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 63
BLAST of FC868633 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.435e-28 Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 1 Query: 493 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLR 681 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL+++ Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 212
BLAST of FC868633 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.435e-28 Identity = 57/63 (90.48%), Postives = 62/63 (98.41%), Query Frame = 1 Query: 493 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLR 681 SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAEL+++ Sbjct: 150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVK 212
BLAST of FC868633 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.506e-25 Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 1 Query: 472 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLR 681 LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE D LYPGGSFDPL DPEAFAEL+++ Sbjct: 1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVK 71
BLAST of FC868633 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21 Identity = 74/213 (34.74%), Postives = 101/213 (47.42%), Query Frame = 1 Query: 49 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLR 681 MA+S+ S S VG LAPS +G T S V+ + W F G+P P++L G PGD+G+D GL+ PE F + +E E+ HCRWAML G + PE L G W KA +G YLGNP + ++ I A + + + E R + YPGG+FDPLG + DP F EL+L+ Sbjct: 1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKLK 190
BLAST of FC868633 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18 Identity = 62/169 (36.69%), Postives = 85/169 (50.30%), Query Frame = 1 Query: 199 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELRLR 681 PDR + F G PP +L G PGD+G+D GL++DPE+ N++ E++HCRWAMLGA G PELL + G+ W+ AG Q + + +L + +L WA ++ G V I TD YPGG FDPLG + P ELR + Sbjct: 63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTK 221
BLAST of FC868633 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18 Identity = 65/182 (35.71%), Postives = 88/182 (48.35%), Query Frame = 1 Query: 160 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELRLR 681 GS+SV+ + PDR + F G PP +L G PGD+G+D GL +DPE+ N + E++H RWAMLGA G PE L + GV W+ AG Q + + +L + +L WA ++ G V I TD YPGG FDPLG + P ELR + Sbjct: 50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTK 221
BLAST of FC868633 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18 Identity = 58/152 (38.16%), Postives = 78/152 (51.32%), Query Frame = 1 Query: 232 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELRLR 681 G+P PSYL G PGD+G+D+ GL P + +E E+IHCRWAML G + PE L G W KA GG YLG P + ++ I A + + + VE R + YPGG+FDPLG + DP F EL+++ Sbjct: 52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVK 191 The following BLAST results are available for this feature:
BLAST of FC868633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 76
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868633 ID=FC868633; Name=FC868633; organism=Citrus clementina; type=EST; length=682bpback to top |