FC868635

Overview
NameFC868635
Unique NameFC868635
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868635_ssr33 microsatellite FC868635_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9360 contig Ccv1_Contig9360:7..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC868635 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.704e-23
Identity = 62/135 (45.93%), Postives = 79/135 (58.52%), Query Frame = 3 
Query:  279 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRI 665
            WYGPDR  +L        + P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G     NLV A  ++A    ++VL+G  E YR+
Sbjct:   48 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNP---NLVHAQSILAIWACQVVLMGAVEGYRV 175
[Close]
BLAST of FC868635 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.704e-23
Identity = 62/132 (46.97%), Postives = 80/132 (60.61%), Query Frame = 3 
Query:  279 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 665
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E YRI
Sbjct:   49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRI 176
[Close]
BLAST of FC868635 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.837e-23
Identity = 60/132 (45.45%), Postives = 77/132 (58.33%), Query Frame = 3 
Query:  279 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 665
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YRI
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 178
[Close]
BLAST of FC868635 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.837e-23
Identity = 60/132 (45.45%), Postives = 77/132 (58.33%), Query Frame = 3 
Query:  279 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 665
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YRI
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRI 176
[Close]
BLAST of FC868635 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.318e-23
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 3 
Query:  279 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 665
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E YRI
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRI 178
[Close]
BLAST of FC868635 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.318e-23
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 3 
Query:  279 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 665
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRV 178
[Close]
BLAST of FC868635 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.318e-23
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 3 
Query:  279 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 665
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178
[Close]
BLAST of FC868635 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.318e-23
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 3 
Query:  279 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 665
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177
[Close]
BLAST of FC868635 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.318e-23
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 3 
Query:  279 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 665
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 178
[Close]
BLAST of FC868635 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.318e-23
Identity = 59/132 (44.70%), Postives = 77/132 (58.33%), Query Frame = 3 
Query:  279 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRI 665
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E YR+
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177
The following BLAST results are available for this feature:
BLAST of FC868635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CB21_SILPR3.704e-2345.93Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_ORYSJ3.704e-2346.97Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2G_SOLLC4.837e-2345.45Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC4.837e-2345.45Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SPIOL6.318e-2344.70Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB27_TOBAC6.318e-2344.70Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC6.318e-2344.70Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_NICPL6.318e-2344.70Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_TOBAC6.318e-2344.70Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC6.318e-2344.70Chlorophyll a-b binding protein 16, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31002H07EF AbioticL1 Citrus clementina cDNA clone C31002H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868635 ID=FC868635; Name=FC868635; organism=Citrus clementina; type=EST; length=749bp
GATCTTCACCATTTCATTTCTCTAAACAAAGAAGCAGCAGCAGCAACACT
CTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGG
AGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGA
CTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTC
TTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGT
CTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAA
TTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTG
ACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAGCAA
GAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTCATGCCA
GATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTAAC
AAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGC
TCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAACATCCCAA
TCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGTGGTGCT
GAATATTATAGAATCACCAAACGTTTTGGATTGGAGGACAAGCTCACCCA
GTGGTCCATTTGACCACTGGGATTACAAAGATCTGACAATTTGCATTGC
back to top