FC868646

Overview
NameFC868646
Unique NameFC868646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12949 contig Ccv1_Contig12949:87..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: MPG1_SULAC (Putative mannose-1-phosphate guanyltransferase OS=Sulfolobus acidocaldarius GN=mpg1 PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.259e-21
Identity = 55/176 (31.25%), Postives = 103/176 (58.52%), Query Frame = 3
Query:  195 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGKQINAGI 722
            + A++L GG+ TRLRPL+L+ PK L+    KP++ + + +L +  V  + L++    + +L+ +K+    L   I+   E   LG AGPL     K   +  +   V+  D+ +E  F +++E+H++ G  A++  T+V++PS+YGV++T+    ++ + +EKPK  +   +NAGI
Sbjct:    2 VSAIVLAGGYATRLRPLSLTKPKALLPVLGKPLMDYTLYSLASSDVDTIYLSLRVMADKVLDHVKQL--NLQKNIVSVIEESRLGDAGPLKFINSKY--NLSDDVIVVYGDIYAEIDFNKLLEYHQSKGCNATLTATQVEDPSRYGVLITDGH--RLIQIIEKPKTPLSNLVNAGI 171          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: YBB2_SCHPO (Probable mannose-1-phosphate guanyltransferase OS=Schizosaccharomyces pombe GN=SPBC13G1.02 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.709e-20
Identity = 64/181 (35.36%), Postives = 96/181 (53.04%), Query Frame = 3
Query:  201 ALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEAL-KAVGVTEVVLAINYQPEVMLNFLKEFEAKLGI--KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVTEESTGKVEKFVEKPKLFVGKQINAGI 722
            A+ILVGG   GTR RPL+  VPKPL +   + MI H + AL K   V +V L   Y   V  +F+ E  +      +I   +E   LGT G L   RD+++       FV+++DV   +P  E++  H       ++M TKV  ++ S +G +V E STG+V  +V+KP  ++   I+ GI
Sbjct:    5 AVILVGGPSRGTRFRPLSFDVPKPLFKIGGREMIYHHLAALSKIESVKDVFLVGFYDESVFKDFINEVASHFPSFNRIKYLREYNCLGTGGGLYHFRDQILKGHTSNVFVMHADVCCSFPLQELLNVHHEKKALVTLMATKVSKEDASNFGCLVEEPSTGRVLHYVDKPSSYLSNIISCGI 185          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: STRD_STRGR (Glucose-1-phosphate thymidylyltransferase OS=Streptomyces griseus GN=strD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.388e-16
Identity = 53/164 (32.32%), Postives = 93/164 (56.71%), Query Frame = 3
Query:  195 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKP 686
            MKAL+L GG GTRLRP+T +  K LV  ANKP++ + +EA++A G+ +V + +    + ++  + +  ++ G+K+    +++PLG A  + ++RD L +D    F +   D        + +   +A   +A +M+T+V EP  +GV    +S G+V    EKP
Sbjct:    1 MKALVLAGGTGTRLRPITHTSAKQLVPVANKPVLFYGLEAIRAAGIIDVGIVVGDTADEIVAAVGD-GSRFGLKVSYIPQSKPLGLAHCVLISRDFLGED---DFIMYLGDNFVVGVVEDSVREFRAARPDAHLMLTRVPEPRSFGVAELSDS-GQVLGLEEKP 159          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: GLMU_METM5 (Bifunctional protein glmU OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=MmarC5_0513 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.568e-15
Identity = 60/178 (33.71%), Postives = 93/178 (52.25%), Query Frame = 3
Query:  195 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKL--FVGKQINAGI 722
            M A+IL  G GTRL P+T S PKP++  A KP++ H IE ++   V ++ L + ++ E ++ +  E       KI    + + LGT   +  A++ + DD    F VLN DVI E    E++++      E ++ ++KVD P  +GV+       KV   +EKPK        INAGI
Sbjct:    1 MDAIILCAGKGTRLHPITESRPKPMIPIAGKPILEHIIEKIEN-HVEKIYLVVGFEKEKIIEYFNE-----NPKIEYILQEKQLGTGHAVLTAKNFIKDD----FLVLNGDVIFEDSIDEILDY------ENAVALSKVDNPENFGVIELGYD-NKVINLLEKPKKEELTSNFINAGI 161          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: GLMU_METJA (Bifunctional protein glmU OS=Methanocaldococcus jannaschii GN=glmU PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.674e-15
Identity = 58/176 (32.95%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  195 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGKQINAGI 722
            M A+IL  G G RLRPLT + PKP++  A KP++ H IE ++ + V  + L + Y+ E ++++ K        KI   ++ E  GT   +  A+D + D+    F V+N D+I E    E +++  A      + V +V  P  +GVVV ++    +E   EKP+      INAGI
Sbjct:    1 MDAIILCAGKGERLRPLTENRPKPMIPIAGKPILQHIIEKVEDL-VDNIYLIVKYKKEKIVDYFKNHP-----KIKFLEQGEIDGTGQAVLTAKDYVDDE----FLVINGDIIFEDDLEEFLKYKYA------VAVKEVKNPENFGVVVLDDENNIIE-LQEKPENPKSNLINAGI 159          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: GLMU_METMP (Bifunctional protein glmU OS=Methanococcus maripaludis GN=MMP1076 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.492e-15
Identity = 60/178 (33.71%), Postives = 92/178 (51.69%), Query Frame = 3
Query:  195 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKL--FVGKQINAGI 722
            M A+IL  G GTRL P+T S PKP++  A KP+I H IE ++   V ++ L + YQ E ++++ K+       KI    + + LGT   +  A++ +  D    F VLN DVI E    E++ +      E ++ ++ VD P  +GV+       K+   +EKPK        INAGI
Sbjct:    1 MDAIILCAGKGTRLHPITESRPKPMIPIAGKPIIEHIIEKIEN-HVEKIYLIVGYQKEKIIDYFKD-----NPKIEYILQEKQLGTGHAVLTAKNFIKGD----FLVLNGDVIFEDSIDEILNY------ENAVSLSNVDNPENFGVIELGYD-NKIINLLEKPKKEEITSNLINAGI 161          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: GLMU_METM7 (Bifunctional protein glmU OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0329 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14
Identity = 59/178 (33.15%), Postives = 92/178 (51.69%), Query Frame = 3
Query:  195 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKL--FVGKQINAGI 722
            M A+IL  G GTRL P+T S PKP++  A KP++ H IE ++   V ++ L + ++ E ++ + KE       KI    + + LGT   +  A++ + DD    F VLN D+I E    E++ +      E ++ ++KV  P  +GVV       K+   +EKPK        INAGI
Sbjct:    1 MDAIILCAGKGTRLYPITESRPKPMIPIAGKPILEHIIEKIENY-VEKIYLVVGFEKEKIIEYFKE-----NPKIEYILQEKQLGTGHAVLTAKNFIKDD----FLVLNGDIIFEDSIDEILVY------ENAVALSKVGHPENFGVVELGYD-NKIINLLEKPKKEELPSNLINAGI 161          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: GLMU_METVS (Bifunctional protein glmU OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0399 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.043e-14
Identity = 59/182 (32.42%), Postives = 91/182 (50.00%), Query Frame = 3
Query:  195 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKP------KLFVGKQINAGI 722
            M A+IL  G GTRL P+T + PKP++  A KP++ H IE ++   V ++ L + ++ E ++++    E     KI    + + LGT   + +A++ +  D    F VLN DVI E    E + +  A G      ++KVD P  +GV+       KV   +EKP        F    INAGI
Sbjct:    1 MDAVILCAGSGTRLYPITENRPKPMIPIAGKPILEHIIEKIEN-HVEKIYLVVGFEKEKIIDYFYGNE-----KIEFIVQEKQLGTGHAVLMAKNYIKGD----FLVLNGDVIFESDILEFLNYENAVG------LSKVDNPENFGVIELGYD-NKVINLLEKPNEDEIKSKFTSNLINAGI 165          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: GLMU_META3 (Bifunctional protein glmU OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_0642 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 55/179 (30.73%), Postives = 92/179 (51.40%), Query Frame = 3
Query:  195 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPM---ILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGKQINAGI 722
            M A+IL  G GTRL PLT ++PKP++     P+   I+++I+ L    V  + L + Y+ E+++N  K  +     KI   ++T+  GT   + +A++ +  D    F V+N D+I +     ++        +  I + +VD PS +GV+V +     +E   EKPK      INAGI
Sbjct:    1 MDAVILCAGKGTRLMPLTENIPKPMLPVGGAPILERIINKIDKL----VENIYLIVKYEKEIIINHFKNND-----KIKFIEQTDIDGTGYAVLMAKNHISGD----FLVINGDIIFDDDLTNIVN----DDVKNIITLNEVDNPSNFGVIVVDNQNNIIE-LQEKPKNPKSNLINAGI 161          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: RFBF_BACSU (Probable glucose-1-phosphate cytidylyltransferase OS=Bacillus subtilis GN=yfnH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 53/182 (29.12%), Postives = 89/182 (48.90%), Query Frame = 3
Query:  195 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQ--ETEPLG-----------------TAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEK 683
            MKA+IL GG GTR+  +T  +PKPL     KP++ H ++  +  GV E +L + Y+ E +  +  ++E K     + S   E + LG                 TAG +  A+D + D+T   F +   D ++      +I +H+  G  A+  VT +D+ S++G +  E+  G  + F EK
Sbjct:    1 MKAVILCGGKGTRMSEVTNDIPKPLAMIGGKPILWHIMKIYQYYGVNEFILLLGYKGEKIKEYFLDYEWKHNSLTLDSSTGEVQMLGQPETWKITFLETGVDTLTAGRILQAKDYIGDET---FLLTYGDGLANINLFHLISYHQTKGAAAT--VTGIDKVSQFGTLTVED--GMAKTFSEK 175          
The following BLAST results are available for this feature:
BLAST of FC868646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
MPG1_SULAC4.259e-2131.25Putative mannose-1-phosphate guanyltransferase OS=... [more]
YBB2_SCHPO4.709e-2035.36Probable mannose-1-phosphate guanyltransferase OS=... [more]
STRD_STRGR5.388e-1632.32Glucose-1-phosphate thymidylyltransferase OS=Strep... [more]
GLMU_METM51.568e-1533.71Bifunctional protein glmU OS=Methanococcus maripal... [more]
GLMU_METJA2.674e-1532.95Bifunctional protein glmU OS=Methanocaldococcus ja... [more]
GLMU_METMP3.492e-1533.71Bifunctional protein glmU OS=Methanococcus maripal... [more]
GLMU_METM71.733e-1433.15Bifunctional protein glmU OS=Methanococcus maripal... [more]
GLMU_METVS5.043e-1432.42Bifunctional protein glmU OS=Methanococcus vanniel... [more]
GLMU_META31.916e-1330.73Bifunctional protein glmU OS=Methanococcus aeolicu... [more]
RFBF_BACSU4.269e-1329.12Probable glucose-1-phosphate cytidylyltransferase ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003A06EF AbioticL1 Citrus clementina cDNA clone C31003A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868646 ID=FC868646; Name=FC868646; organism=Citrus clementina; type=EST; length=725bp
GAGATAATATGTATAAATAAACAACCAATCAGCTTGTTATCTCAGACAAC
AAAAGCAAAGCAAAAGCGAAGCGCGCGAAGCTCGCCTCATCCGTTGACTG
AGCTGTCGGTCCCGAGTCACGACTCGCGACTCTTGTTTTTGAACTCAGTT
GTTTGCCGTTCGGATCCGGTCTTAATTAAAGGCTCCGTATCACAATGAAG
GCACTTATTCTTGTTGGAGGGTTCGGAACACGGTTGAGGCCGTTGACGCT
TAGTGTCCCTAAGCCACTTGTTGAATTTGCTAACAAACCCATGATCCTGC
ATCAGATAGAGGCCCTTAAGGCAGTTGGAGTGACTGAAGTAGTTTTGGCT
ATTAACTACCAGCCAGAGGTGATGTTGAACTTTTTGAAGGAATTTGAAGC
AAAGCTTGGGATCAAGATCATCTGCTCACAAGAGACTGAGCCACTGGGCA
CTGCTGGTCCTCTGGCTCTGGCTAGAGACAAATTGATTGACGATACTGGT
GAGCCATTTTTCGTCCTTAACAGTGATGTTATTAGTGAGTACCCATTTGC
AGAAATGATTGAATTCCACAAAGCACATGGAGGAGAGGCCTCCATCATGG
TAACCAAGGTGGATGAGCCATCAAAATATGGTGTGGTGGTTACGGAAGAG
TCTACTGGAAAAGTTGAGAAATTCGTTGAGAAACCTAAATTATTTGTTGG
TAAACAAATTAATGCTGGAATTNAT
back to top