FC868646

Overview
NameFC868646
Unique NameFC868646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: GLMU_OCEIH (Bifunctional protein glmU OS=Oceanobacillus iheyensis GN=glmU PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 52/171 (30.41%), Postives = 89/171 (52.05%), Query Frame = 3
Query:  201 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGKQI 710
            A+IL  G GTR++     + K L   A +PM+ H ++ L+ V + ++V  + +  E       + +A+LG     + + E LGT   +  A D L D+ G       ++ +I    F E+I++HK  G +ASI+ TKV+ P+ YG VV  +   +VE+ VE      G+++
Sbjct:    6 AVILAAGQGTRMKS---KLHKMLHPVAGRPMVQHVVDQLQQVNLNKIVTIVGFGAE-------KVKAQLGSSSEFAFQKEQLGTGHAVLQAEDLLKDEKGVTVVACGDTPLIRAETFEELIQYHKKTGAKASILTTKVENPTGYGRVVRNDQ-DEVERIVEHKDANEGERL 165          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: RFBF_SALTI (Glucose-1-phosphate cytidylyltransferase OS=Salmonella typhi GN=rfbF PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 56/195 (28.72%), Postives = 86/195 (44.10%), Query Frame = 3
Query:  195 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET---------EPLG-----------TAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGKQINAG 719
            MKA+IL GG GTRL   T+  PKP+VE   KP++ H ++     G+ + ++   Y+  V+  +   +   +        E          EP             T G L    + + DD  E F     D +++      I+FHKAHG +A++  T    P ++G +  +   G+V  F EKPK   G  IN G
Sbjct:    1 MKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD--EAFLFTYGDGVADLDIKATIDFHKAHGKKATL--TATFPPGRFGAL--DIQAGQVRSFQEKPK-GDGAMINGG 188          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: RFBF_SALTY (Glucose-1-phosphate cytidylyltransferase OS=Salmonella typhimurium GN=rfbF PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 56/195 (28.72%), Postives = 86/195 (44.10%), Query Frame = 3
Query:  195 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQET---------EPLG-----------TAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPKLFVGKQINAG 719
            MKA+IL GG GTRL   T+  PKP+VE   KP++ H ++     G+ + ++   Y+  V+  +   +   +        E          EP             T G L    + + DD  E F     D +++      I+FHKAHG +A++  T    P ++G +  +   G+V  F EKPK   G  IN G
Sbjct:    1 MKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKDD--EAFLFTYGDGVADLDIKATIDFHKAHGKKATL--TATFPPGRFGAL--DIRAGQVRSFQEKPK-GDGAMINGG 188          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: GLMU_CLOD6 (Bifunctional protein glmU OS=Clostridium difficile (strain 630) GN=glmU PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11
Identity = 44/165 (26.67%), Postives = 86/165 (52.12%), Query Frame = 3
Query:  189 ITMKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEK 683
            +  KA+IL  G GTR++      PK + +   K M+ H I+  K  GV + V+ + ++ +V+       + KL  +II + +TE LGT   + +A++ + D+        ++ +I E     + E+H  +   A+++ T+V  P+ YG ++ ++  G + K VE+
Sbjct:    1 MNFKAIILAAGKGTRMKS---KYPKVIHKVCGKEMVNHIIDVSKKSGVKDTVVILGHEADVV-------KEKLAEEIIIAMQTEQLGTGHAVKMAKEYINDEDTIVVLCGDTPLIKEETLKRLFEYHIENKYHATVLTTRVGNPTGYGRIIRDKK-GDLLKIVEQ 154          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: EI2BG_RAT (Translation initiation factor eIF-2B subunit gamma OS=Rattus norvegicus GN=Eif2b3 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.052e-11
Identity = 42/143 (29.37%), Postives = 75/143 (52.45%), Query Frame = 3
Query:  198 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSK 626
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++      +V      EF+ KL   I+C  +   +GTA  L     KL  D      VL  D+I++    E+++  +A+    ++++ K  E ++
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT--KDVQKALCAEFKMKLKPDIVCIPDEADMGTADSLRHIYPKLKTDV----LVLGCDLITDVALHEVVDLFRAYDASLAMLMRKGQESTE 140          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: SPSI_BACSU (Spore coat polysaccharide biosynthesis protein spsI OS=Bacillus subtilis GN=spsI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 50/167 (29.94%), Postives = 80/167 (47.90%), Query Frame = 3
Query:  195 MKALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEF--EAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEKPK 689
            MK +IL GG G+RL PLT +V K L+     PMI   I  L+  G+ +++L    Q E M  F K      +LG+ I    +    G +  L+ A+        E F +L  D I E       E  +  G  A +++ +VD+P ++G+   +E   ++   +EKP+
Sbjct:    1 MKGVILAGGNGSRLMPLTKAVNKHLLPVGPYPMIYWSIMKLQEAGIKDILLI--SQKEHMPQFYKLLGNGEELGVTITYQVQPAASGISDGLSYAKR---FTKKESFILLLGDNIFEDSLKPYTERFEQQGKGAKVLLKEVDDPERFGIAEIDEKNKRIRSIIEKPE 162          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: EI2BG_HUMAN (Translation initiation factor eIF-2B subunit gamma OS=Homo sapiens GN=EIF2B3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 40/137 (29.20%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  198 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTK 608
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++      +V      EF+ K+   I+C  +   +GTA  L     KL  D      VL+ D+I++    E+++  +A+    ++++ K
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTT--RDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDV----LVLSCDLITDVALHEVVDLFRAYDASLAMLMRK 134          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: EI2BG_MACFA (Translation initiation factor eIF-2B subunit gamma OS=Macaca fascicularis GN=EIF2B3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 40/137 (29.20%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  198 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTK 608
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++      +V      EF+ K+   I+C  +   +GTA  L     KL  D      VL+ D+I++    E+++  +A+    ++++ K
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPAGNKPLIWYPLNLLERVGFEEVIVVTT--RDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYMYPKLKTDV----LVLSCDLITDVALHEVVDLFRAYDASLAMLMRK 134          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: EI2BG_BOVIN (Translation initiation factor eIF-2B subunit gamma OS=Bos taurus GN=EIF2B3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 42/142 (29.58%), Postives = 76/142 (53.52%), Query Frame = 3
Query:  198 KALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAI--NYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE 617
            +A+++  G G+R+  LT S+PKPL+   NKP+I + +  L+ VG  EV++    + Q  +  +F K    K+ + I+C  +   +GTA  L     KL  D      VL+ D+I++    E+++  +AH    ++++ K  E
Sbjct:    4 QAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVITTKDVQKALCADFNK---MKMKLDIVCIPDEADMGTADSLRHIYQKLKTDV----LVLSCDLITDVALHEVVDLFRAHDASLAMLMRKGQE 138          
BLAST of FC868646 vs. ExPASy Swiss-Prot
Match: GLMU_PELPD (Bifunctional protein glmU OS=Pelobacter propionicus (strain DSM 2379) GN=glmU PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 49/179 (27.37%), Postives = 92/179 (51.40%), Query Frame = 3
Query:  201 ALILVGGFGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVTEESTGKVEKFVEK----PKLFVGKQINAGI 722
            A+IL  G GTR++   + V  P+   A +PMI   +EA +  G   VVL + +Q E +    + F+      I C+ + E LGT   +A A   L   +G    +  ++ ++      +++ FH++ G   +++  +++ P  YG V+ +E+ G+V + VE+    P+    ++IN+GI
Sbjct:    6 AIILAAGKGTRMKSGLVKVLHPI---AGRPMIDWPLEAARGAGAAPVVLVVGHQAEAV---RERFQG--AGDIACALQAEQLGTGHAVACAAPALAGFSGTVLILCGDTPLLRGGTLTDLLAFHRSQGAAVTVLTARMENPHGYGRVLRDEA-GRVLRIVEQKDASPQECSVREINSGI 175          
The following BLAST results are available for this feature:
BLAST of FC868646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
GLMU_OCEIH4.269e-1330.41Bifunctional protein glmU OS=Oceanobacillus iheyen... [more]
RFBF_SALTI1.242e-1228.72Glucose-1-phosphate cytidylyltransferase OS=Salmon... [more]
RFBF_SALTY1.622e-1228.72Glucose-1-phosphate cytidylyltransferase OS=Salmon... [more]
GLMU_CLOD61.052e-1126.67Bifunctional protein glmU OS=Clostridium difficile... [more]
EI2BG_RAT1.052e-1129.37Translation initiation factor eIF-2B subunit gamma... [more]
SPSI_BACSU2.343e-1129.94Spore coat polysaccharide biosynthesis protein sps... [more]
EI2BG_HUMAN2.343e-1129.20Translation initiation factor eIF-2B subunit gamma... [more]
EI2BG_MACFA3.059e-1129.20Translation initiation factor eIF-2B subunit gamma... [more]
EI2BG_BOVIN3.996e-1129.58Translation initiation factor eIF-2B subunit gamma... [more]
GLMU_PELPD6.816e-1127.37Bifunctional protein glmU OS=Pelobacter propionicu... [more]

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Properties
Property NameValue
Genbank descriptionC31003A06EF AbioticL1 Citrus clementina cDNA clone C31003A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868646 ID=FC868646; Name=FC868646; organism=Citrus clementina; type=EST; length=725bp
GAGATAATATGTATAAATAAACAACCAATCAGCTTGTTATCTCAGACAAC
AAAAGCAAAGCAAAAGCGAAGCGCGCGAAGCTCGCCTCATCCGTTGACTG
AGCTGTCGGTCCCGAGTCACGACTCGCGACTCTTGTTTTTGAACTCAGTT
GTTTGCCGTTCGGATCCGGTCTTAATTAAAGGCTCCGTATCACAATGAAG
GCACTTATTCTTGTTGGAGGGTTCGGAACACGGTTGAGGCCGTTGACGCT
TAGTGTCCCTAAGCCACTTGTTGAATTTGCTAACAAACCCATGATCCTGC
ATCAGATAGAGGCCCTTAAGGCAGTTGGAGTGACTGAAGTAGTTTTGGCT
ATTAACTACCAGCCAGAGGTGATGTTGAACTTTTTGAAGGAATTTGAAGC
AAAGCTTGGGATCAAGATCATCTGCTCACAAGAGACTGAGCCACTGGGCA
CTGCTGGTCCTCTGGCTCTGGCTAGAGACAAATTGATTGACGATACTGGT
GAGCCATTTTTCGTCCTTAACAGTGATGTTATTAGTGAGTACCCATTTGC
AGAAATGATTGAATTCCACAAAGCACATGGAGGAGAGGCCTCCATCATGG
TAACCAAGGTGGATGAGCCATCAAAATATGGTGTGGTGGTTACGGAAGAG
TCTACTGGAAAAGTTGAGAAATTCGTTGAGAAACCTAAATTATTTGTTGG
TAAACAAATTAATGCTGGAATTNAT
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