FC868647

Overview
NameFC868647
Unique NameFC868647
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 61/231 (26.41%), Postives = 119/231 (51.52%), Query Frame = 1
Query:   46 KILVFTLLFISS------AHSFYLPGVAPRDFQRHDP--------LNVKVDKLSSTKTQLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDD-------EYRVNLILDNLPVAVLRQRRDGSQ--STTYEHGFRVGFKGNYQGS--------KEEKYFINNHLSFRVMYH-KDRETDSARIVGFEVTPNSINHEY 642
            ++L+ +LL + +      + +FYLPG+AP +F   +         + + V++L S ++ LPY+Y    +C+ ++    +ENLG+VL G+RIE S Y+F   +  +CK+ C      E A++ K+K++         Y+ + I+DN+PV       DG +  +  +  G  +  KG+ + +        + + ++I NH+  ++ YH  +  +  AR+V  ++ P S  H +
Sbjct:   15 RLLLLSLLLLGAVPGPRRSGAFYLPGLAPVNFCDEEKKSDECKAEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSENLGQVLFGERIEPSPYKFTFNKKETCKLVCTKTYHTEKAED-KQKLEFLKKSMLLNYQHHWIVDNMPVTWCYDVEDGQRFCNPGFPIGCYITDKGHAKDACVISSDFHERDTFYIFNHVDIKIYYHVVETGSMGARLVAAKLEPKSFKHTH 244          
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: TMN3_YEAST (Transmembrane 9 superfamily member 3 OS=Saccharomyces cerevisiae GN=TMN3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 60/199 (30.15%), Postives = 96/199 (48.24%), Query Frame = 1
Query:   76 SSAHSFYLPGVAPRDFQRHDPLNVKVDKLSSTKTQLPYDYYFLKY-CKPAKIVNSAE-NLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVN-LILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDRETDSARIVGFEVTPNSINHEYKEWSEKN 663
            SS  + Y   + P  +++ DPL + V+K+ S  TQLPY YY L + C P         +L E++RGDR   S Y+ +  ED  C+  C  K   E  +   + + + Y V  LI D LP A          +T ++  +  GF   +     +K +++NH+   + +H   + D   IVGFEV P S++  +   + KN
Sbjct:   42 SSQKNLYDGWITPNFYRKGDPLELIVNKVESDLTQLPYAYYDLPFTCPPTMHKKPLHLSLNEIIRGDRKWESDYKLKFGEDNPCETLCARKTTKEGMQTLDKLVREGYVVQWLIDDELPAAT-----TFISTTDHKKYYASGFPLGFIDPDTDKTYLHNHVMLVIRFHAS-DNDKNTIVGFEVYPRSVSDYHCPGASKN 234          
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: YON8_SCHPO (Transmembrane 9 superfamily protein C1105.08 OS=Schizosaccharomyces pombe GN=SPBC1105.08 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14
Identity = 55/204 (26.96%), Postives = 95/204 (46.57%), Query Frame = 1
Query:   40 TMKILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVDKLSST------KTQLPYDYYFLKY--CKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDRETDSARIVGFEVTPNS 627
            +   +VF  + + +  SF L  ++P+++     ++  V+ +S             Y+YY  ++  C+P  I   +E+LG VL GDR+ NS  E +M E+  C   C   + +      ++ I   Y VN  +DNLPVA   +  + S++ +   GF +G       + E+   + NH    + YH    +D  R+VG  V P S
Sbjct:   10 SFSFVVFVSVLLQTCFSFQLTPLSPKNYPPGASIDTTVNTISPFIGDGRGSDIFNYEYYDERFHFCRPENIAKQSESLGSVLFGDRLYNSPIEIKMLENQDCVPLCASIIPSSDVSFIRDLISKNYVVNWNIDNLPVATYLEGTN-SKNYSLSPGFPLG------KNTEKGVILFNHYDIVIEYH-TTSSDQHRVVGAYVKPVS 205          
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.791e-13
Identity = 56/211 (26.54%), Postives = 101/211 (47.87%), Query Frame = 1
Query:    4 TKMNSPKKKSTKTMKILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVDKLSSTKT-QLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDRETDSARIVGFEVTPNSIN 633
            T + +P+  S + + IL+   L + + H   + GV    ++  DP+ + V+K+      Q  Y YY L  C P KI + + +LGEVL GDR+  S+YE   RE++  ++ C +++ +   +  ++ I++ Y    ++D+LP+        G      E GF              K  +  HL F + +H DR    A +   +V P+S++
Sbjct:    2 TVVGNPRSWSCQWLPILI---LLLGTGHGPGVEGVT--HYKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIR-------GFVGYMEESGFL---------PHSHKIGLWTHLDFHLEFHGDR-IIFANVSVRDVKPHSLD 190          
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.219e-13
Identity = 55/211 (26.07%), Postives = 99/211 (46.92%), Query Frame = 1
Query:    4 TKMNSPKKKSTKTMKILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVDKLSSTKT-QLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDRETDSARIVGFEVTPNSIN 633
            T +  P+  S   + +L+   L +   H  ++ GV    ++  DP+ + V+K+      Q  Y YY L  C P KI + + +LGEVL GDR+  S+YE   RE++  ++ C +++ +   +  ++ I++ Y    ++D+LP+        G      E GF              K  +  HL F + +H DR    A +   +V P+S++
Sbjct:    2 TVLGYPRSWSCHCLPVLI---LLLGIGHGPWVEGVT--HYKPGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIR-------GFVGYMEESGFL---------PHSHKIGLWTHLDFHLEFHGDR-IIFANVSVRDVKPHSLD 190          
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: TM9S1_RAT (Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.385e-12
Identity = 55/211 (26.07%), Postives = 98/211 (46.45%), Query Frame = 1
Query:    4 TKMNSPKKKSTKTMKILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVDKLSSTKT-QLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDRETDSARIVGFEVTPNSIN 633
            T +  P+  S   + +L+   L +   H   + GV    ++  DP+ + V+K+      Q  Y YY L  C P KI + + +LGEVL GDR+  S+YE   RE++  ++ C +++ +   +  ++ I++ Y    ++D+LP+        G      E GF              K  +  HL F + +H DR    A +   +V P+S++
Sbjct:    2 TVLGHPRSWSCHCLPVLI---LLLGIGHGPRVEGVT--HYKPGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIR-------GFVGYMEESGFL---------PHSHKIGLWTHLDFHLEFHGDR-IIFANVSVRDVKPHSLD 190          
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.385e-12
Identity = 41/142 (28.87%), Postives = 78/142 (54.93%), Query Frame = 1
Query:    4 TKMNSPKKKSTKTMKILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVDKLSSTKT-QLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLILDNLPV 426
            T + +P+  S + + IL+   L + + H   + GV    ++  DP+ + V+K+      Q  Y YY L  C P KI + + +LGEVL GDR+  S+YE   RE++  ++ C +++ +   +  ++ I++ Y    ++D+LP+
Sbjct:    2 TVVGNPRSWSCRWLPILI---LLLGTGHGPGVEGVT--HYKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPI 138          
BLAST of FC868647 vs. ExPASy Swiss-Prot
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 57/212 (26.89%), Postives = 97/212 (45.75%), Query Frame = 1
Query:    4 TKMNSPKKKSTKTMKILVFTLLFISSAHSFYLPGV-APRDFQRHDPLNVKVDKLSSTKT-QLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDRETDSARIVGFEVTPNSIN 633
            T +  P+  S +   +L+  LL          PGV     ++  DP+ + V+K+      Q  Y YY L  C P KI + + +LGEVL GDR+  S+YE   RE++  +V C +++ +   +  ++ I++ Y    ++D+LP+        G      E GF              K  +  HL F + +H DR    A +   +V P+S++
Sbjct:    2 TVLGHPRSWSCRWWPLLLLLLLTGRE------PGVEGVTHYKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRVLCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIR-------GFVGYMEESGFL---------PHSHKIGLWTHLDFHLEFHGDR-IIFANVSVRDVKPHSLD 190          
The following BLAST results are available for this feature:
BLAST of FC868647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TM9S2_HUMAN2.440e-1726.41Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
TMN3_YEAST4.162e-1730.15Transmembrane 9 superfamily member 3 OS=Saccharomy... [more]
YON8_SCHPO9.594e-1426.96Transmembrane 9 superfamily protein C1105.08 OS=Sc... [more]
TM9S1_HUMAN2.791e-1326.54Transmembrane 9 superfamily member 1 OS=Homo sapie... [more]
TM9S1_MOUSE6.219e-1326.07Transmembrane 9 superfamily member 1 OS=Mus muscul... [more]
TM9S1_RAT1.385e-1226.07Transmembrane 9 superfamily member 1 OS=Rattus nor... [more]
TM9S1_PONAB1.385e-1228.87Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]
TM9S1_BOVIN6.875e-1226.89Transmembrane 9 superfamily member 1 OS=Bos taurus... [more]

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Properties
Property NameValue
Genbank descriptionC31003A07EF AbioticL1 Citrus clementina cDNA clone C31003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868647 ID=FC868647; Name=FC868647; organism=Citrus clementina; type=EST; length=663bp
AACACGAAAATGAATTCACCTAAGAAAAAAAGCACAAAAACAATGAAAAT
ACTTGTCTTCACTCTCCTTTTCATCTCCTCCGCCCACTCTTTCTACCTTC
CCGGCGTTGCTCCTCGTGATTTTCAAAGACACGATCCACTAAATGTCAAA
GTGGACAAACTATCATCTACAAAGACTCAACTGCCATATGACTACTACTT
CTTGAAGTACTGTAAGCCTGCAAAGATTGTGAACAGTGCAGAAAATTTGG
GGGAGGTTCTTCGTGGTGACAGAATTGAAAATTCTGTGTATGAATTCGAA
ATGAGGGAGGATCTGTCATGTAAAGTAGCCTGTCGAGTAAAAGTTGATGC
TGAATCTGCAAAAAATTTTAAAGAAAAAATTGATGATGAATACCGAGTTA
ATTTGATTCTTGACAACCTTCCAGTTGCTGTTCTCAGACAAAGAAGAGAT
GGAAGTCAGTCTACGACATATGAACATGGTTTTCGTGTTGGATTCAAAGG
AAATTATCAAGGGAGCAAAGAAGAGAAATACTTTATCAATAACCACTTGA
GCTTCAGAGTCATGTACCACAAGGATCGTGAGACTGATTCTGCACGAATT
GTGGGGTTTGAGGTTACTCCAAACAGTATCAATCATGAATACAAGGAGTG
GTCTGAAAAGAAC
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