FC868652

Overview
NameFC868652
Unique NameFC868652
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.691e-15
Identity = 68/180 (37.78%), Postives = 89/180 (49.44%), Query Frame = 2
Query:  200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703
            GADRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G I PE+L K G+  Q     WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGL  D ++
Sbjct:   50 GADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCIFPELLSKNGV--QFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGP----------------LGEGLDPLYPGGA-FDPLGLADDPEA 204          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 72/213 (33.80%), Postives = 103/213 (48.36%), Query Frame = 2
Query:   92 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKD 694
            E +R++LG   A+     +     V ++A +  +  GADRP +    S ++ SYL+G   GDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PE+L K+G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG+ F+PLGL  D
Sbjct:   23 ELSRKVLGNVEARVTMRRT-----VSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPET---FARNREL---EVIHARWAMLGALGCLTPELLAKSGVKFGEA--VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVTDPIYPGGS-FDPLGLADD 205          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.426e-15
Identity = 67/177 (37.85%), Postives = 86/177 (48.59%), Query Frame = 2
Query:  200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKD 694
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMGF E  R                     LG   D  YPGG  F+PLGL  D
Sbjct:   49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP----------------LGEGLDKVYPGGA-FDPLGLADD 200          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.426e-15
Identity = 67/177 (37.85%), Postives = 86/177 (48.59%), Query Frame = 2
Query:  200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKD 694
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMGF E  R                     LG   D  YPGG  F+PLGL  D
Sbjct:   49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGP----------------LGEGLDKVYPGGA-FDPLGLADD 200          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 66/180 (36.67%), Postives = 88/180 (48.89%), Query Frame = 2
Query:  200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703
            G+DRPL+    S    SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG+ F+PLGL  D ++
Sbjct:   51 GSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVTPELLAKNGVKFGEA--VWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP----------------LGEVEDPIYPGGS-FDPLGLADDPEA 205          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 71/188 (37.77%), Postives = 91/188 (48.40%), Query Frame = 2
Query:  167 VRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKD 694
            V++A T  +  G DRP +    S Q  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R                     LG   DP YPGG  F+PLGL  D
Sbjct:   41 VKSAPTS-IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP----------------LGEGLDPIYPGGA-FDPLGLADD 202          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.442e-14
Identity = 67/180 (37.22%), Postives = 87/180 (48.33%), Query Frame = 2
Query:  200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R                     LG   D  YPGG  F+PLGL  D ++
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEA--VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGP----------------LGEGLDKIYPGGA-FDPLGLADDPEA 205          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.189e-14
Identity = 67/180 (37.22%), Postives = 87/180 (48.33%), Query Frame = 2
Query:  200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R                     LG   D  YPGG  F+PLGL  D ++
Sbjct:   23 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEA--VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGP----------------LGEGLDKIYPGGA-FDPLGLADDPEA 177          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.189e-14
Identity = 68/180 (37.78%), Postives = 85/180 (47.22%), Query Frame = 2
Query:  200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703
            G DRP +    S+Q  SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G   PE+L K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R                     LG   DP YPGG  F+PLGL  D  S
Sbjct:   51 GPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHSRWAMLGALGCTFPELLEKNGVKFGEA--VWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGP----------------LGEGLDPLYPGGA-FDPLGLADDPDS 205          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.165e-14
Identity = 67/180 (37.22%), Postives = 87/180 (48.33%), Query Frame = 2
Query:  200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R                     LG   D  YPGG  F+PLGL  D ++
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP----------------LGEGLDKIYPGGA-FDPLGLADDPEA 205          
The following BLAST results are available for this feature:
BLAST of FC868652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB21_LEMGI1.691e-1537.78Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_PHYPA3.767e-1533.80Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSJ6.426e-1537.85Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI6.426e-1537.85Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU1.432e-1436.67Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_GOSHI1.432e-1437.77Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB26_PETSP2.442e-1437.22Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC3.189e-1437.22Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB215_PEA3.189e-1437.78Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB24_SOLLC4.165e-1437.22Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionC31003A12EF AbioticL1 Citrus clementina cDNA clone C31003A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868652 ID=FC868652; Name=FC868652; organism=Citrus clementina; type=EST; length=756bp
GATCGTATTGAAGTAGAGAAACATCAGGAAAAAAGAAAATTAAAAAATGG
CAACCCAAGCTTTGGTTTCATCATCTCTTACATCTTCAGTGGAGACTGCG
AGACAAATTCTTGGAGCAAGATCAGCTCAATCCCCAACTGGGTCATCAAG
AAAAGGTTCCTTTGTTGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAG
GAGCAGACAGACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTG
GATGGCAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGA
CCCTGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCG
AGGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCA
CCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGC
CTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGG
CAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCC
GAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCA
ATACTTCCTCGGATTCGAGAAATACTTGGGAGGTTCCGGCGATCCGGCTT
ACCCTGGAGGAACTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAGAAG
TCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAAATGAAAAATGGCAAT
GTTGGC
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