FC868652

Overview
NameFC868652
Unique NameFC868652
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8975 contig Ccv1_Contig8975:14..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 65/180 (36.11%), Postives = 87/180 (48.33%), Query Frame = 2
Query:  200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703
            G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+GR+AMLGA+G + PE+L + G+   E    WF+ G  I   G   Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG+ F+PLGL  D ++
Sbjct:   50 GPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHGRWAMLGALGCVFPELLARNGVKFGEA--VWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVVDPLYPGGS-FDPLGLADDAEA 204          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 66/192 (34.38%), Postives = 93/192 (48.44%), Query Frame = 2
Query:  164 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703
            V ++A +     G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG+ F+PLGL +D ++
Sbjct:   39 VAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVVDPLYPGGS-FDPLGLAEDPEA 205          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 66/180 (36.67%), Postives = 86/180 (47.78%), Query Frame = 2
Query:  200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   D  YPGG  F+PLGL  D ++
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGP----------------LGEGLDKIYPGGA-FDPLGLADDPEA 205          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 69/206 (33.50%), Postives = 95/206 (46.12%), Query Frame = 2
Query:  173 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKSMXXXXXXXXXXXXMAML 754
            AA++     G DR L+    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG+ F+PLGL  D ++             +AML
Sbjct:   42 AAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVVDPLYPGGS-FDPLGLADDPEAFGELKVKELKKGRLAML 222          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 67/186 (36.02%), Postives = 86/186 (46.24%), Query Frame = 2
Query:  173 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKD 694
            AAS      G DR L+    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y   P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGL  D
Sbjct:   55 AASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP----------------LGEVTDPIYPGGN-FDPLGLADD 215          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 67/197 (34.01%), Postives = 94/197 (47.72%), Query Frame = 2
Query:  149 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703
            RK +   +  S+     G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG+ F+PLGL +D ++
Sbjct:   36 RKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVVDPLYPGGS-FDPLGLAEDPEA 207          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 72/212 (33.96%), Postives = 100/212 (47.17%), Query Frame = 2
Query:  131 SPTGSSRKGSFVVR----AASTPPVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703
            SP+ S   G+  V     A+   PV  G+     DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG+ F+PLGL +D ++
Sbjct:   20 SPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVVDPLYPGGS-FDPLGLAEDPEA 206          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 67/197 (34.01%), Postives = 95/197 (48.22%), Query Frame = 2
Query:  149 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703
            RK +   +  S+     G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                   + LG   DP YPGG+ F+PLGL +D ++
Sbjct:   35 RKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----------------EPLGEVVDPLYPGGS-FDPLGLAEDPEA 206          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 70/208 (33.65%), Postives = 98/208 (47.12%), Query Frame = 2
Query:  122 SAQSPTGSSRKG--SFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703
            SA   TG+ R      V +  ++     G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPGG+ F+PLGL +D ++
Sbjct:   23 SAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP----------------LGEVVDPLYPGGS-FDPLGLAEDPEA 205          
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 66/186 (35.48%), Postives = 86/186 (46.24%), Query Frame = 2
Query:  173 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKD 694
            AAS      G DR ++    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y   P          ++  ++ LMG  E  R                     LG   DP YPGG  F+PLGL  D
Sbjct:   55 AASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP----------------LGEVTDPIYPGGN-FDPLGLADD 215          
The following BLAST results are available for this feature:
BLAST of FC868652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB22_HORVU3.526e-1336.11Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_SOLLC4.605e-1334.38Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB23_TOBAC4.605e-1336.67Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB22_MAIZE4.605e-1333.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2A_PINSY6.015e-1336.02Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB24_TOBAC6.015e-1334.01Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC6.015e-1333.96Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB25_NICPL7.855e-1334.01Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_TOBAC7.855e-1333.65Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB2A_PYRPY1.026e-1235.48Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC31003A12EF AbioticL1 Citrus clementina cDNA clone C31003A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868652 ID=FC868652; Name=FC868652; organism=Citrus clementina; type=EST; length=756bp
GATCGTATTGAAGTAGAGAAACATCAGGAAAAAAGAAAATTAAAAAATGG
CAACCCAAGCTTTGGTTTCATCATCTCTTACATCTTCAGTGGAGACTGCG
AGACAAATTCTTGGAGCAAGATCAGCTCAATCCCCAACTGGGTCATCAAG
AAAAGGTTCCTTTGTTGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAG
GAGCAGACAGACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTG
GATGGCAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGA
CCCTGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCG
AGGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCA
CCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGC
CTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGG
CAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCC
GAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCA
ATACTTCCTCGGATTCGAGAAATACTTGGGAGGTTCCGGCGATCCGGCTT
ACCCTGGAGGAACTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAGAAG
TCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAAATGAAAAATGGCAAT
GTTGGC
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