FC868652
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12 Identity = 62/157 (39.49%), Postives = 80/157 (50.96%), Query Frame = 2 Query: 245 YLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTL---FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKD 694 YL+G + GDYG+DP GL PE K+ A+ E+I+ R+AMLGA G I PE L K G A+ WF+TG + G T NY+ P L V E+ L+G AE+ R + L FE D +PGG F+PLGL KD Sbjct: 84 YLNGEVAGDYGYDPFGLGKKPENFA-----KYQAF-ELIHARWAMLGAAGFIIPEALNKYGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNG-----------LDFE-------DKLHPGGP-FDPLGLAKD 214
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.092e-12 Identity = 63/180 (35.00%), Postives = 87/180 (48.33%), Query Frame = 2 Query: 200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703 G DR + S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E R LG DP YPGG+ F+PLGL D ++ Sbjct: 53 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGP----------------LGEVTDPLYPGGS-FDPLGLADDPEA 207
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.092e-12 Identity = 63/180 (35.00%), Postives = 87/180 (48.33%), Query Frame = 2 Query: 200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703 G DRP + S+ + SYL G PGDYG+D +S DPE F + + L EVI+ R+AMLGA+G + PE+L K GL E WF+ G I G +Y +P ++ ++ LMG E R G++G DP PGG F+PLGL D ++ Sbjct: 52 GPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAKNGLKFGEA--VWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYR----VGGGTLGEGL------------DPLLPGGA-FDPLGLADDPEA 206
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.092e-12 Identity = 60/165 (36.36%), Postives = 81/165 (49.09%), Query Frame = 2 Query: 227 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGK 691 S +S SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E R LG DP YPGG+ F+PLGL + Sbjct: 25 SGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP----------------LGEVVDPLYPGGS-FDPLGLAE 164
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.685e-12 Identity = 65/197 (32.99%), Postives = 92/197 (46.70%), Query Frame = 2 Query: 149 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703 RK + AS+ G DR + S ++ SYL G P DYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+ + G+ E WF+ G I G +Y +P ++ ++ LMG E R LG DP YPGG+ F+PLGL +D ++ Sbjct: 36 RKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELFARNGIKFGEA--VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVIDPLYPGGS-FDPLGLAEDPEA 207
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.685e-12 Identity = 63/180 (35.00%), Postives = 88/180 (48.89%), Query Frame = 2 Query: 200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703 G+DR + S + SYL G PGDYG+D GLS DPE F + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E Y + E LG + D YPGG+ F+PLGL D ++ Sbjct: 51 GSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVE---------------GYRVAGEGPLGEAEDLLYPGGS-FDPLGLATDPEA 206
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11 Identity = 58/164 (35.37%), Postives = 79/164 (48.17%), Query Frame = 2 Query: 242 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703 SYL G PGDYG+D GLS DPE F + + L EVI+ +AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E R LG DP YPGG+ F+PLGL D ++ Sbjct: 8 SYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHSTWAMLGALGCVFPELLSRNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPIYPGGS-FDPLGLADDPEA 146
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.935e-11 Identity = 62/180 (34.44%), Postives = 86/180 (47.78%), Query Frame = 2 Query: 200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703 G DR + S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+ + G+ E WF+ G I G +Y +P ++ ++ LMG E R LG DP YPGG+ F+PLGL D ++ Sbjct: 52 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELFARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVIDPLYPGGS-FDPLGLADDPEA 206
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11 Identity = 60/178 (33.71%), Postives = 82/178 (46.07%), Query Frame = 2 Query: 200 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLF--------VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKD 694 G +R W ++ + +YL G PGDYG+D GLS DPE + E E+I+ R+AMLGA+G PE+L K+G E WF+ G I G +Y +P + +++ LMG E R N G G DP YPG + F+PLGL D Sbjct: 38 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARWAMLGALGCQTPELLAKSGTKFGEA--VWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADD 190
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11 Identity = 62/180 (34.44%), Postives = 86/180 (47.78%), Query Frame = 2 Query: 200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703 G DR + S ++ SYL G PGDYG+D LS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+ E WF+ G I G +Y +P ++ ++ LMG E R LG DP YPGG+ F+PLGL D ++ Sbjct: 53 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAELSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVVDPLYPGGS-FDPLGLADDPEA 207 The following BLAST results are available for this feature:
BLAST of FC868652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868652 ID=FC868652; Name=FC868652; organism=Citrus clementina; type=EST; length=756bpback to top |