FC868652
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11 Identity = 64/197 (32.49%), Postives = 92/197 (46.70%), Query Frame = 2 Query: 149 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703 RK + + S+ G DR + S ++ SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+ + G+ E W + G I G +Y +P ++ ++ LMG E R LG DP YPGG+ F+PLGL +D ++ Sbjct: 36 RKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPE---TFAKNREL---EVIHCRWAMLGALGCVFPELFARNGVKFGEA--VWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGP----------------LGVVVDPLYPGGS-FDPLGLAEDPEA 207
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11 Identity = 67/214 (31.31%), Postives = 96/214 (44.86%), Query Frame = 2 Query: 116 ARSAQSPTGSSRKGSFVVRAASTP--PVKQGA-----DRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703 A + S + +R G +R T PV G+ DR + S ++ SYL G PGDYG+D GLS T F + + L EVI+ R+ MLGA+G + PE+ + G+ E WF+ G I G +Y +P ++ ++ LMG E R LG DP YPGG+ F+PLGL D ++ Sbjct: 17 AVNVPSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPAT--FAKNRKL---EVIHCRWTMLGALGCVFPELFARNGVKFGEA--VWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVIDPLYPGGS-FDPLGLADDPEA 206
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11 Identity = 62/178 (34.83%), Postives = 81/178 (45.51%), Query Frame = 2 Query: 200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKD 694 G DR W S + +YL G PGDYG+D GLS DPE + E EVI+ R+A+LGA+G + PE+L AG+ E WF+ G I G +Y P + +++ LMG E R N G G DP YPG + F+PLGL D Sbjct: 41 GPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYREL------EVIHARWALLGALGILTPELLSTYAGVKFGEP--VWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADD 193
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11 Identity = 64/218 (29.36%), Postives = 91/218 (41.74%), Query Frame = 2 Query: 110 LGARSAQSPTGSSRKGS--FVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKSMXXXXXXXXXXXXMAML 754 +G S +P+ S + F A ++ V A+ WF + ++LDGS PGD+GFDPLGL+ PE F E E+ + R+AML G + PE LG + + A G G W + T+ +E + FAE +R + +P EK YPGG F+PLG KD +AML Sbjct: 13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAE---WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKE------SEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAA-LPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDP-----------EK-------KKYPGGA-FDPLGFSKDPAKFEELKLKEIKNGRLAML 200
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11 Identity = 61/169 (36.09%), Postives = 82/169 (48.52%), Query Frame = 2 Query: 221 FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKD 694 F+ + YL G PGDYG+D GLS DP+ + E E+I+ R+A+LGA+G + PE+L + AG+ Q WF+ G I G NY + + +++ LMG AE R AN GS G FL D YPGG F+PLGL D Sbjct: 45 FSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREI------ELIHARWALLGALGILTPELLSQYAGV--QFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR----ANGGSEG---FL-------DDLDTLYPGGP-FDPLGLADD 190
BLAST of FC868652 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11 Identity = 61/180 (33.89%), Postives = 85/180 (47.22%), Query Frame = 2 Query: 200 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGGTLFNPLGLGKDEKS 703 G DR + S + SYL G PGDYG+D GLS DPE F + + L EVI+ R+AMLGA+G + PE+L + G+ E +WF+ G I G +Y + ++ ++ LMG E R LG DP YPGG+ F+PL L D ++ Sbjct: 31 GPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEA--SWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGP----------------LGEVTDPIYPGGS-FDPLALADDPEA 185 The following BLAST results are available for this feature:
BLAST of FC868652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868652 ID=FC868652; Name=FC868652; organism=Citrus clementina; type=EST; length=756bpback to top |