FC868653

Overview
NameFC868653
Unique NameFC868653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_DESAP (Glycogen synthase OS=Desulforudis audaxviator (strain MP104C) GN=glgA PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.359e-39
Identity = 90/213 (42.25%), Postives = 136/213 (63.85%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +++MKAGI  +D++ TVS  YA+E+ + E  G  ++ ++R+    + GIVNG++  E++P TD  +   YD     + K   K  LQ E+ LPV R++PV+G I RL +QKG D++A  I   ++ ++Q+++LG G K  E    ++++ +P K      FN+ LA  I AG+D  L+PSRFEPCGL QL ++RYGT+PIV  TGGL DTV E
Sbjct:  211 VSFMKAGIQYADVLTTVSRTYAREIQTPE-YGQRMEGVLRQRAHELYGIVNGINYHEFDPKTDPRLHRNYDVDH-WEHKKENKFTLQREMNLPV-RDVPVLGLITRLVDQKGLDLIAEIIDELMRLDIQMVILGKGDKYYEDMFREMKVQHPGKIAAHIGFNVVLAQRIYAGSDMFLMPSRFEPCGLGQLISLRYGTIPIVRETGGLADTVNE 420          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_DESRM (Glycogen synthase OS=Desulfotomaculum reducens (strain MI-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.387e-39
Identity = 87/212 (41.04%), Postives = 133/212 (62.74%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            ++++MK G+  SD++ TVS  YA+E+   +  G +LD ++R  K  + GI+NG+D+  +NP TD +I V +   TV D K + KE+LQ  + LP+  ++PV G + RL  QKG +++ + +   +  +VQ++VLG+G+K  E         YP+K      F   LAH I AG+D  L+PS FEPCGL Q+ A+RYG++PIV  TGGL DT+
Sbjct:  197 QVSFMKGGVNYSDILTTVSETYAEEIQLPQ-YGEQLDGLLRHQKRKLHGILNGIDIDIYNPDTDPHICVNFSRETV-DKKHINKESLQKILCLPMRPDVPVFGMVSRLVSQKGLELIGSVLDDILALDVQLVVLGSGEKHYEDMFRSASRRYPDKVSVNIMFGNTLAHRIYAGSDIYLMPSAFEPCGLSQMIALRYGSIPIVRETGGLRDTI 406          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_NITEC (Glycogen synthase OS=Nitrosomonas eutropha (strain C91) GN=glgA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.729e-39
Identity = 92/213 (43.19%), Postives = 128/213 (60.09%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            ++++KAGI  SD + TVSP YA+E +  E  G  L  ++ K    I GIVNG+D   WNP TD Y+  KY  S  + AK   K ALQ  +GL  ++ IP+ G + RL  QKGSDI+    P       Q+ +LG+G   +E+QL  L   +P K      ++  L+H+I AG D  L+PSRFEPCGL Q+++  YGT P+V +TGGL+DTV +
Sbjct:  213 LSFLKAGIYYSDHISTVSPGYARE-IQQEPLGFGLQGLLAKRSDDITGIVNGIDTAIWNPATDPYLVKKY-TSRNLSAKAANKLALQQTMGLENNQAIPLFGTVSRLTHQKGSDIMLQVAPMLADLPAQLALLGSGDALLEQQLAALAQAFPTKIAVRIGYDEALSHLINAGTDCFLMPSRFEPCGLNQMYSQHYGTPPVVHATGGLMDTVVD 423          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_HELMI (Glycogen synthase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glgA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.729e-39
Identity = 90/214 (42.06%), Postives = 133/214 (62.15%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            ++N+MKAG++ +D++ TVS  YA+E+ + E  G  LD ++R   + + GIVNG+DV+ ++P TD +I   Y A  + + K   K  LQ + GLPV    P++G + RL +QKG D+         +E++Q++V+G G    E    +L+  +PEK      F+ PLA  +  G+DF L+PSRFEPCGL QL A RYG +PIV STGGL DTV +
Sbjct:  202 QVNFMKAGLVFADLINTVSRTYAEEIQTSE-YGWGLDGLLRLRHSDLFGIVNGIDVEVYDPATDPHIPHHYSADNI-EGKKRNKAELQRQFGLPVSE-APLLGLVHRLVDQKGIDLFEGIEEALFREDLQLVVVGQGDPRYEGLFRRLKQHFPEKVGLFIGFDTPLAQRVYGGSDFFLMPSRFEPCGLGQLIAFRYGAIPIVRSTGGLADTVTD 412          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_FRATN (Glycogen synthase OS=Francisella tularensis subsp. novicida (strain U112) GN=glgA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.729e-39
Identity = 90/236 (38.14%), Postives = 134/236 (56.78%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEG---------FTGFQMGSFSVD 694
            ++++MKAG+  +D + TVSP YA+E+ + E +G  L+ ++  R   + G++NG+D Q WNP  D  I   Y ++TV   K   K ALQ  +GL    +  + G + RL EQKG ++L  AI        Q+++LG+G K +E+        YP+       ++   AH IIAG+D I++PSRFEPCGL QL+ + YGT+P+V   GGL DTV +           TGF    FSV+
Sbjct:  203 QVSFMKAGLYFADKITTVSPTYAKEIQTYE-QGCGLEGLLADRHNDLYGVLNGVDPQIWNPKKDSLIATNYSSTTVATGKAKCKLALQQMMGLAEKEDALLFGIVTRLTEQKGLNLLVEAIGEITSRGGQVVLLGSGDKALEEVFLAAAKKYPKSIAVQIGYDEEQAHRIIAGSDVIMVPSRFEPCGLTQLYGLTYGTLPLVHKVGGLADTVTDSSLENLADGTATGFVFDEFSVE 437          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_PHOPR (Glycogen synthase OS=Photobacterium profundum GN=glgA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 88/214 (41.12%), Postives = 129/214 (60.28%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSG-EDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDA--KPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            I+ +KAG+  +D V  VSP+YA EL++     G+E D   R   + GI+NG D  +WNP TD YI  K+ A+ V  A  K   +  LQ +V LP + ++PV G + RL EQKG   L   +  F+  +VQ++++GTG   +   L  +   + +K   V  ++ PLAH + AG DF ++PS FEPCGL Q++++ YGT+PIV S GGL DTV +
Sbjct:  214 ISMLKAGVAYADKVNAVSPNYASELLTHLGSHGMEADFQNRAKDLYGIINGCDYDDWNPETDVYIKQKFKANKVSLARGKKACRRDLQKQVNLP-EVDVPVYGMVCRLTEQKGLHYLIPVLEDFLLNDVQVVIVGTGDPTLASALRDISEQHSDKFAFVETYSNPLAHCVEAGVDFFMMPSEFEPCGLNQMYSLAYGTLPIVRSVGGLKDTVID 426          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_MARMS (Glycogen synthase OS=Marinomonas sp. (strain MWYL1) GN=glgA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 90/214 (42.06%), Postives = 132/214 (61.68%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            + + +KAG++ ++ V TVSP YA+E+++ E  G  LD  +R  +  + GI+NG+D  +W+P  D  I   YD  T +  K   K AL  E GL  D N PV G + RL EQKG D++   +P  +++  +++VLG+G K +E Q  +L+  YP +      +    +H + AG D +LIPSRFEPCGL QL+A++YGT+PIV  TGGL DTV E
Sbjct:  200 RFSGLKAGLVYANAVTTVSPTYAKEILTPE-YGDGLDGALRAMQDRLVGILNGVDYNQWSPEKDTLIPHNYDIDT-LSQKQANKLALLQENGLSEDLNQPVFGVVSRLTEQKGLDLVLQVMPALLEKGARLVVLGSGDKYLESQYLELQNNYPNQVSVRIGYFEDYSHRLQAGIDALLIPSRFEPCGLTQLYALKYGTLPIVRQTGGLADTVFE 411          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_MAGSA (Glycogen synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=glgA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 86/220 (39.09%), Postives = 134/220 (60.91%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDA--KPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGF 670
            ++++K+G+  SD + TVSP YA+E+ +    G  ++ ++  R   + GI+NG D + WNP  D ++     A T  DA  K   K ALQAE+GL    + P++  + RL + KG D++ AA+P+ +K   Q+ V+GTG +P+E         +P +      ++ PLAH ++AG D +L+PSRFEPCGL Q +A RYGTVP+  +TGGL DT+ +  TG+
Sbjct:  203 LSFLKSGLFYSDRITTVSPRYAKEIQTPAF-GCGMEGLLAHRAADLTGILNGADYEVWNPAADTHLD---HAFTPGDAAGKACNKAALQAELGLSQAPDAPLMVIVSRLNDHKGMDLVLAALPNILKMGAQVAVVGTGDRPLEDGFRAAAAAHPTQVAARIGYSEPLAHRMMAGGDMLLMPSRFEPCGLTQFYAFRYGTVPVAHATGGLADTLVD--TGY 416          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_CLOBB (Glycogen synthase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=glgA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 93/233 (39.91%), Postives = 136/233 (58.37%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------AEGFTGFQMGSFSVD 694
            + +MK  I  SDM+ TVS  YA+E+ + E  G  LD ++R+    ++GI+NG+D  E+NP  D  I   YD + + D K   K  LQ+E+GL V+ NIP+I  + RL  QKG D+L       ++ ++Q++++GTG K  E   + L+  Y  K     +F+  LAH   A +D  L+PS FEPCGL QL A+RYG++PIV  TGGL DT+        EG  GF   +++ D
Sbjct:  199 VGFMKGAINYSDMITTVSYSYAEEIKTPEF-GERLDWLLREKSYMLRGILNGIDYDEFNPKNDSLINKNYDVNNIND-KYENKRNLQSELGLSVNENIPMIAMVTRLTSQKGLDLLVHISERLLQNDIQLVIVGTGDKHYEDHFKWLDYKYGNKVSANIRFDNNLAHKAYAASDMFLMPSLFEPCGLGQLIALRYGSIPIVRETGGLKDTIRAYNEYTGEG-NGFSFYNYNAD 428          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_ALKMQ (Glycogen synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=glgA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 90/211 (42.65%), Postives = 128/211 (60.66%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            +N+MK G+  SD + TVSP YAQE +     G  L+ ++  +K  ++G+ NG+D   +NP TD ++   + +  + + K   K  LQ  + L VD  IP+IG + RL EQKG D++A  +   ++E +Q++VLGTG    E+   Q  I YPE+      F+  LA  I  G+DF L+PS FEPCGL QL A+RYGTVPIV  TGGL DT+
Sbjct:  198 VNYMKGGLNFSDYITTVSPTYAQE-IQDPFFGEGLEGVLSRKKKQLQGVTNGIDDSVYNPQTDIHLFKNFSSENLRNKKDN-KLGLQERLNLAVDAKIPMIGMVTRLVEQKGLDLVANQLEKLMEEEIQLVVLGTGDHQYEEIFRQAAIKYPERISTNLFFDEVLAQQIYGGSDFFLMPSLFEPCGLGQLIALRYGTVPIVRETGGLKDTI 406          
The following BLAST results are available for this feature:
BLAST of FC868653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_DESAP3.359e-3942.25Glycogen synthase OS=Desulforudis audaxviator (str... [more]
GLGA_DESRM4.387e-3941.04Glycogen synthase OS=Desulfotomaculum reducens (st... [more]
GLGA_NITEC5.729e-3943.19Glycogen synthase OS=Nitrosomonas eutropha (strain... [more]
GLGA_HELMI5.729e-3942.06Glycogen synthase OS=Heliobacterium modesticaldum ... [more]
GLGA_FRATN5.729e-3938.14Glycogen synthase OS=Francisella tularensis subsp.... [more]
GLGA_PHOPR7.483e-3941.12Glycogen synthase OS=Photobacterium profundum GN=g... [more]
GLGA_MARMS7.483e-3942.06Glycogen synthase OS=Marinomonas sp. (strain MWYL1... [more]
GLGA_MAGSA7.483e-3939.09Glycogen synthase OS=Magnetospirillum magneticum (... [more]
GLGA_CLOBB7.483e-3939.91Glycogen synthase OS=Clostridium botulinum (strain... [more]
GLGA_ALKMQ7.483e-3942.65Glycogen synthase OS=Alkaliphilus metalliredigens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003B03EF AbioticL1 Citrus clementina cDNA clone C31003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868653 ID=FC868653; Name=FC868653; organism=Citrus clementina; type=EST; length=713bp
ATAAACCTGTGAGAGGATCAAAATCAACTGGATGAAAGCTGGAATATTAG
AATCAGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTT
TCTGGTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGG
CATTAAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGA
CTGACAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCG
AAGCCTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGA
TAGAAATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAG
GCTCAGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTT
CAGATAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGA
ACAGTTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCA
ATATTCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATT
CCAAGCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTA
TGGAACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGG
CAGAAGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAG
GCTGTGGATCCAG
back to top