FC868653

Overview
NameFC868653
Unique NameFC868653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9445 contig Ccv1_Contig9445:1004..1715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: SSY2_SOLTU (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 3.959e-48
Identity = 99/214 (46.26%), Postives = 144/214 (67.29%), Query Frame = 2
Query:   26 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            N   AG+  +D V+TVS  Y+ EL + +  G  L  II +    ++GIVNG+D +EWNP  D ++     + Y   T+   KP  K ALQ E+GLPV  ++P+IGFIGRL+ QKG D++A A+P  + ++VQ+++LGTG++ +E+ L Q E  + +K RG   F++  +H I AGAD +L+PSRFEPCGL QL+AM+YGT+P+V + GGL DTV
Sbjct:  482 NIFAAGLKTADRVVTVSHGYSWELKTSQG-GWGLHQIINENDWKLQGIVNGIDTKEWNPELDVHLQSDGYMNYSLDTLQTGKPQCKAALQKELGLPVRDDVPLIGFIGRLDPQKGVDLIAEAVPWMMGQDVQLVMLGTGRRDLEQMLRQFECQHNDKIRGWVGFSVKTSHRITAGADILLMPSRFEPCGLNQLYAMKYGTIPVVHAVGGLRDTV 694          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: SSG2_PEA (Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.566e-47
Identity = 100/214 (46.73%), Postives = 140/214 (65.42%), Query Frame = 2
Query:   26 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            N   AG+  +D ++TVS  YA EL + E  G  L NII ++  K  GIVNG+D ++WNP  D Y+       Y+  T+   K   K ALQ E+GLPV  ++P+I FIGRL+ QKG D++A AIP  +  +VQ+++LGTG+  +E+ L++ E  + +K R    F++ +AH I AG+D +L+PSRFEPCGL QL+AM YGTVP+V   GGL DTV
Sbjct:  467 NIFAAGLKTADRIVTVSHGYAWELKTSEG-GWGLHNIINESDWKFRGIVNGVDTKDWNPQFDAYLTSDGYTNYNLKTLQTGKRQCKAALQRELGLPVREDVPIISFIGRLDHQKGVDLIAEAIPWMMSHDVQLVMLGTGRADLEQMLKEFEAQHCDKIRSWVGFSVKMAHRITAGSDILLMPSRFEPCGLNQLYAMSYGTVPVVHGVGGLRDTV 679          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: SSY21_ORYSJ (Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 9.750e-47
Identity = 105/215 (48.84%), Postives = 140/215 (65.12%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            +N   AGI  +D +LTVS  YA EL + E  G  L  II ++  K  GIVNG+D  +WNP  D ++       Y   TV   K   K ALQ E+GLPV  ++PVI FIGRL+ QKG D++A A+P    ++VQ+I+LGTG++ +E  L +LE  + ++ RG   F+I LAH + AGAD +L+PSRFEPCGL QL+AM YGTVP+V + GGL DTV
Sbjct:  463 LNIFAAGIKAADRLLTVSHGYAWELKTAEG-GWGLHGIINESDWKFQGIVNGIDTTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELGLPVRGDVPVIAFIGRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSIRLAHRMTAGADILLMPSRFEPCGLNQLYAMMYGTVPVVHAVGGLRDTV 676          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_THEYD (Glycogen synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgA PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.837e-46
Identity = 99/224 (44.20%), Postives = 137/224 (61.16%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKT--GIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGFQMGSFS 688
            +N++K G+  +D++ TVSP YA+E+++  D G  LD ++RK    + GI+NG+D + WNP  D +I  KY    + D K   KE L A  G+      P+I FIGR+  QKG DI+  A+P+ IK  +  I  GTG+   E ++ +L+  YP K      F+  LAH I AGAD +L+PSR+EPCGL QL AMRYGT+PI   TGGL DTV +  TGF    +S
Sbjct:  216 VNFLKGGLFNADIITTVSPTYAKEILT-PDYGAGLDGVLRKRKENLVGIINGIDYKIWNPEEDPFIAKKYGLQNIND-KQKNKEDLIALAGINSSLQDPIIAFIGRMVYQKGIDIVVDAMPNLIKNGISFIFEGTGESYYEHKIRELQNSYPSKVFAFIGFDEALAHKIYAGADSLLVPSRYEPCGLSQLIAMRYGTIPICRKTGGLSDTVEDKVTGFLFSEYS 437          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_THEM4 (Glycogen synthase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=glgA PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.837e-46
Identity = 98/214 (45.79%), Postives = 140/214 (65.42%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            KIN++K GIL SD++ TVSP YA E+ + E  G +LD ++R     + G++NG+D  E+NP TDK I V Y    + D K   K  LQ E+GLP DR IP+IG I RL +QKG DIL+  + + +  ++Q ++LGTG +  E+  ++ +  +P+      KF+I LA  I A +D  L+PSR+EPCGL Q++++RYGT+PIV  TGGL DTV E
Sbjct:  198 KINFLKGGILYSDIINTVSPTYANEIQTKE-YGEKLDGVLRLRSADLYGVLNGIDYDEYNPETDKRIFVNYSLDNI-DKKYENKVRLQKELGLPEDRRIPMIGMITRLVDQKGLDILSEVLRYIVNYDIQFVILGTGDEKYEEMFKKAQQEFPKNVSANVKFDINLAQKIYAASDMFLMPSRYEPCGLGQMYSLRYGTIPIVRYTGGLADTVLE 409          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_FERNB (Glycogen synthase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glgA PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.837e-46
Identity = 103/230 (44.78%), Postives = 151/230 (65.65%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE-----------GFTGF 670
            KIN++K GI+ SD++ TVSP YA+E +  ++ G +L+ ++R   + + GI+NG+D +E+NPLTD  I V YD +T+ + K   K+ LQ E+GLP +R++P+ G I RL +QKG DI+A  + +    ++Q ++LGTG++  E   ++L   YPEK     KF+I LA  I AG D  L+PSR+EPCGL Q++++RYGT+PIV  TGGL DTV E           GF GF
Sbjct:  203 KINFLKGGIIFSDIINTVSPTYAKE-IQQKEYGEKLEGVLRARSSDLYGILNGIDYEEFNPLTDNKIYVNYDLNTI-EKKKENKKLLQKELGLP-ERDVPMFGMINRLVDQKGLDIMAEIMDYVSLFDIQFVLLGTGEEKYENMFKKLGEKYPEKYSINLKFDIVLAQKIYAGCDMFLMPSRYEPCGLGQMYSLRYGTIPIVRYTGGLADTVKEYNPETKEGNGFGFEGF 429          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_ANADF (Glycogen synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=glgA PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.705e-46
Identity = 93/223 (41.70%), Postives = 150/223 (67.26%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGFQMGS 682
            ++N++KAG++ +D + TVSP YA+E+ + +  GV LD ++R     + GI+NG+DV+EW+P TD+++  +Y A+  +  K   K ALQ E+GLP   ++P++  IGRL EQKG D++ AA+   +  ++Q+++LGTG+  +E+   +     P++      F+  LAH + AGAD  L+PSRFEPCGL Q++++RYGT+P+V + GGL DTV E F G+  G+
Sbjct:  196 QLNFLKAGLVFADALTTVSPTYAREIATPQG-GVGLDALLRHRARDLHGILNGIDVEEWDPATDRHLPARYSAAD-LSGKAACKSALQRELGLPERPDVPLVAMIGRLAEQKGLDLVVAALGELLARDLQLVLLGTGRPELEEAFRRAARERPDRMAARIGFDEGLAHRMEAGADLFLMPSRFEPCGLNQMYSLRYGTIPVVRAVGGLEDTV-EDFDGWSRGT 415          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_THELT (Glycogen synthase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=glgA PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.320e-46
Identity = 98/214 (45.79%), Postives = 141/214 (65.89%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +IN++K GIL SD+V TVSP YAQE+ + E  G +LD ++R     + GI+NG+D  E+NP TDK I V YD   + + K + K  LQ E+ L V  ++P+IG I RL +QKG D++   + + +  ++Q +VLGTG K  E+  + +E  YP+K     KF++ LA  I A +D  L+PSR+EPCGL Q++++RYGTVPIV  TGGL D+V E
Sbjct:  202 QINFLKGGILFSDIVTTVSPTYAQEIQT-EQFGEKLDGVLRLRAEDLYGILNGIDYSEYNPATDKRIYVNYDIDHI-EKKKMNKSELQKELNLQVRDDVPLIGMINRLVDQKGLDLIEKIVDYMMMFDIQFVVLGTGDKKYEEFFKNIEKKYPQKISSNMKFDVDLAQKIYAASDMFLMPSRYEPCGLGQMYSLRYGTVPIVRYTGGLADSVKE 413          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSI (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=SSII-3 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.254e-46
Identity = 100/215 (46.51%), Postives = 142/215 (66.05%), Query Frame = 2
Query:   26 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVA 652
            N   AG+  +D V+TVSP Y  EL + E  G  L +IIR+   K  GIVNG+D +EWNP  D ++       Y  +++   KP  K ALQ E+GL V  ++P+IGFIGRL+ QKG DI+  A+P    ++VQ+++LG+G++ +E  L++ E  +  K RG   F++ +AH I AGAD +++PSRFEPCGL QL+AM YGTVP+V + GGL DTV+
Sbjct:  525 NIFGAGLKMADRVVTVSPGYLWELKTTEG-GWGLHDIIRENDWKMNGIVNGIDYREWNPEVDVHLQSDGYANYTVASLDSGKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVS 738          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: SSY23_ORYSJ (Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-3 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.408e-45
Identity = 99/215 (46.05%), Postives = 143/215 (66.51%), Query Frame = 2
Query:   26 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVA 652
            N   AG+  +D V+TVSP Y  EL + E  G  L +IIR+   K  GIVNG+D +EWNP  D ++       Y  +++  +KP  K ALQ E+GL V  ++P+IGFIGRL+ QKG DI+  A+P    ++VQ+++LG+G++ +E  L++ E  +  K RG   F++ +AH I AGAD +++PSRFEPCGL QL+AM YGTVP+V + GGL DT++
Sbjct:  525 NIFGAGLKMADRVVTVSPGYLWELKTTEG-GWGLHDIIRENDWKMNGIVNGIDYREWNPEVDVHLQSDGYANYTVASLDSSKPRCKAALQRELGLEVRDDVPLIGFIGRLDGQKGVDIIGDAMPWIAGQDVQLVLLGSGRRDLEVMLQRFEAQHNSKVRGWVGFSVKMAHRITAGADVLVMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTMS 738          
The following BLAST results are available for this feature:
BLAST of FC868653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
SSY2_SOLTU3.959e-4846.26Granule-bound starch synthase 2, chloroplastic/amy... [more]
SSG2_PEA2.566e-4746.73Granule-bound starch synthase 2, chloroplastic/amy... [more]
SSY21_ORYSJ9.750e-4748.84Soluble starch synthase 2-1, chloroplastic/amylopl... [more]
GLGA_THEYD2.837e-4644.20Glycogen synthase OS=Thermodesulfovibrio yellowsto... [more]
GLGA_THEM42.837e-4645.79Glycogen synthase OS=Thermosipho melanesiensis (st... [more]
GLGA_FERNB2.837e-4644.78Glycogen synthase OS=Fervidobacterium nodosum (str... [more]
GLGA_ANADF3.705e-4641.70Glycogen synthase OS=Anaeromyxobacter sp. (strain ... [more]
GLGA_THELT6.320e-4645.79Glycogen synthase OS=Thermotoga lettingae (strain ... [more]
SSY23_ORYSI8.254e-4646.51Soluble starch synthase 2-3, chloroplastic/amylopl... [more]
SSY23_ORYSJ1.408e-4546.05Soluble starch synthase 2-3, chloroplastic/amylopl... [more]

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Properties
Property NameValue
Genbank descriptionC31003B03EF AbioticL1 Citrus clementina cDNA clone C31003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868653 ID=FC868653; Name=FC868653; organism=Citrus clementina; type=EST; length=713bp
ATAAACCTGTGAGAGGATCAAAATCAACTGGATGAAAGCTGGAATATTAG
AATCAGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTT
TCTGGTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGG
CATTAAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGA
CTGACAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCG
AAGCCTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGA
TAGAAATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAG
GCTCAGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTT
CAGATAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGA
ACAGTTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCA
ATATTCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATT
CCAAGCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTA
TGGAACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGG
CAGAAGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAG
GCTGTGGATCCAG
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