FC868653

Overview
NameFC868653
Unique NameFC868653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_SHIB3 (Glycogen synthase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=glgA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.118e-34
Identity = 78/215 (36.28%), Postives = 127/215 (59.07%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDK-GVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +I+++KAG+  +D +  VSP Y +E+   +   G+E  L    R+  + G++NG+D + W+P TD  +  +Y   T+ D K   K  LQ  +GL VD  +P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        YP +      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV++
Sbjct:  194 QISFLKAGLYYADHITAVSPTYTREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_HALHL (Glycogen synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=glgA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.118e-34
Identity = 82/214 (38.32%), Postives = 129/214 (60.28%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            ++ ++K  ++ +D ++TVSP YA+E+ +    G  LD ++  R+  + GIVNG+D   W+P +D+++  +Y       A+   + A+   VGL      P++GF+GRL EQKG D++ AA+P  +    Q+ +LG G   +E  L      +P +   V  ++  LAH I AG+D  L+PSRFEPCGL QL+++RYGT P+V  TGGL DTV +
Sbjct:  196 QLAFIKGSLVFADTLVTVSPTYAREIQTPAF-GWGLDGLLHHRRDRLFGIVNGIDTATWDPGSDRHLVAQYTGPDDR-ARAANRRAVARAVGLSEGEG-PILGFVGRLVEQKGVDLILAALPRLLAAGAQLALLGAGDHRLETALRAAAEQHPGQVGVVIGYDEALAHQIEAGSDLFLMPSRFEPCGLNQLYSLRYGTPPVVYPTGGLADTVVD 406          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_ACIAC (Glycogen synthase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.118e-34
Identity = 80/214 (37.38%), Postives = 123/214 (57.48%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +++ +KAG+  +D + TVSP YA+E+ + E  G  LD ++R     ++GI+NG+D   WNP  D  I   + A   ++ K   K AL+  +GL  D +  + G +GR+ EQKG D +       +++  Q+ +LG+G   +E  L  L   +P        F+  LAH I AG+D  L+PSRFEPCGL Q+++  YGT P+V  TGGL D+V +
Sbjct:  205 QLSMLKAGLQYADAITTVSPTYAREIQTPE-LGFGLDGVLRARAGRLQGILNGIDTALWNPSQDTLIPAPFSADR-LEGKAACKAALRRTLGLAQDGDRMLFGLVGRMTEQKGIDWVIGGAERLLRQGGQLAILGSGDPALESALRALAKRHPRHMHVTVGFDESLAHGIEAGSDSFLMPSRFEPCGLNQMYSQAYGTPPVVTPTGGLADSVTD 416          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_NOSP7 (Glycogen synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=glgA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.907e-34
Identity = 88/213 (41.31%), Postives = 126/213 (59.15%), Query Frame = 2
Query:   26 NWMKAGILESDMVLTVSPHYAQELVS---GEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVA 652
            N M A +  ++ V TVSP YA+++ +   GE     L  I  K  + GI+NG+D + +NP  DKYI   +   T +D +   K ALQ EVGL V+    +IG + RL EQKG D++   +  F+   + Q ++LGTG +  E Q+ QL   +P +      +N  L+  I AG D  L+PSRFEPCG+ Q+ ++RYG+VPIV  TGGLVDTV+
Sbjct:  178 NTMAAAVQFANKVNTVSPTYAEQIKTPAYGETLEGLLSFISGK--LSGIINGIDTEVYNPEDDKYIAQTFTTET-LDKRKANKIALQEEVGLEVNSKAFLIGIVTRLVEQKGIDLILQILDRFLSYTDAQFVLLGTGDRYYETQMWQLASRFPGRMATYLLYNDALSRRIYAGTDAFLMPSRFEPCGISQMMSLRYGSVPIVRRTGGLVDTVS 387          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_CLOPH (Glycogen synthase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glgA PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.907e-34
Identity = 85/210 (40.48%), Postives = 116/210 (55.24%), Query Frame = 2
Query:   26 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            N++K GI+ SD + TVS  YA ++      G  LD ++R     + GIVNG+D +E+NP  D +I   Y+A      K   K ALQ E+GL  D    +IG + RL +Q G D++   +     E+ Q+I+LGTGK   E         Y  +      ++   +H I A  D  L+PS FEPCGL QL ++RYGTVPIV  TGGLVDTV
Sbjct:  201 NYLKGGIVFSDYITTVSDTYAHDITM-PFYGEGLDGLMRARSDCLCGIVNGIDYEEYNPEFDPFINKPYNAKNFRKEKIKNKRALQQELGLAKDDKAFMIGIVSRLIDQNGLDLIDCVMEDICAEDTQLIILGTGKDRYENLFRHYARKYSSRVSANIFYSNEQSHKIYAACDAFLMPSLFEPCGLSQLMSLRYGTVPIVRETGGLVDTV 409          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_KLEP7 (Glycogen synthase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=glgA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.491e-34
Identity = 77/216 (35.65%), Postives = 127/216 (58.80%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG----IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +I+++KAG+  +D +  VSP YA+E+   +     ++ ++R+      + GI+NG+D   W+P  D  + ++YD  T ++ K   K  LQ  +GL VD   P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P K      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTVA+
Sbjct:  194 QISFLKAGLYYADHITAVSPTYAREITEPQ-YAYGMEGLLRQRHHEGRLSGILNGVDDGIWSPQNDLLLPMRYDRDT-LEEKAENKRQLQIAMGLKVDDKAPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGKVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVAD 407          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_XANOR (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae GN=glgA PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.249e-34
Identity = 83/229 (36.24%), Postives = 131/229 (57.21%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGFQMGSFSVD 694
            ++++++ GI+ +D V TVS  YA++ ++G  +G  LD ++     K  + GIVNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV +G TGF     SV+
Sbjct:  227 QMSFLRGGIVNADHVNTVSVSYAKQ-ITGPAQGCGLDRLLAGRAAKGALTGIVNGIDAS-WDPRTDEYLDSHFSVNQWQGRQDNAAQVRKA-FGLRESTG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGEPDIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE 451          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_XANOM (Glycogen synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=glgA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.249e-34
Identity = 83/229 (36.24%), Postives = 131/229 (57.21%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGFQMGSFSVD 694
            ++++++ GI+ +D V TVS  YA++ ++G  +G  LD ++     K  + GIVNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV +G TGF     SV+
Sbjct:  227 QMSFLRGGIVNADHVNTVSVSYAKQ-ITGPAQGCGLDRLLAGRAAKGALTGIVNGIDAS-WDPRTDEYLDSHFSVNQWQGRQDNAAQVRKA-FGLRESTG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGEPDIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE 451          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_XANCP (Glycogen synthase OS=Xanthomonas campestris pv. campestris GN=glgA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.249e-34
Identity = 82/221 (37.10%), Postives = 128/221 (57.92%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGF 670
            ++++++ GI+ +D V TVS  YAQ+ ++G  +G  LD ++     K  + GIVNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV +G TGF
Sbjct:  192 QMSFLRGGIVHADHVNTVSVSYAQQ-ITGPAQGCGLDRLLAGRAAKGALSGIVNGIDAS-WDPRTDEYLDSHFSVNHWQGRQANAAQVRKA-FGLRESTG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGEPEIEQQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGF 408          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_XANC8 (Glycogen synthase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=glgA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.249e-34
Identity = 82/221 (37.10%), Postives = 128/221 (57.92%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGF 670
            ++++++ GI+ +D V TVS  YAQ+ ++G  +G  LD ++     K  + GIVNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV +G TGF
Sbjct:  192 QMSFLRGGIVHADHVNTVSVSYAQQ-ITGPAQGCGLDRLLAGRAAKGALSGIVNGIDAS-WDPRTDEYLDSHFSVNHWQGRQANAAQVRKA-FGLRESTG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGEPEIEQQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGF 408          
The following BLAST results are available for this feature:
BLAST of FC868653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_SHIB31.118e-3436.28Glycogen synthase OS=Shigella boydii serotype 18 (... [more]
GLGA_HALHL1.118e-3438.32Glycogen synthase OS=Halorhodospira halophila (str... [more]
GLGA_ACIAC1.118e-3437.38Glycogen synthase OS=Acidovorax avenae subsp. citr... [more]
GLGA_NOSP71.907e-3441.31Glycogen synthase OS=Nostoc punctiforme (strain AT... [more]
GLGA_CLOPH1.907e-3440.48Glycogen synthase OS=Clostridium phytofermentans (... [more]
GLGA_KLEP72.491e-3435.65Glycogen synthase OS=Klebsiella pneumoniae subsp. ... [more]
GLGA_XANOR4.249e-3436.24Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANOM4.249e-3436.24Glycogen synthase OS=Xanthomonas oryzae pv. oryzae... [more]
GLGA_XANCP4.249e-3437.10Glycogen synthase OS=Xanthomonas campestris pv. ca... [more]
GLGA_XANC84.249e-3437.10Glycogen synthase OS=Xanthomonas campestris pv. ca... [more]

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Properties
Property NameValue
Genbank descriptionC31003B03EF AbioticL1 Citrus clementina cDNA clone C31003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868653 ID=FC868653; Name=FC868653; organism=Citrus clementina; type=EST; length=713bp
ATAAACCTGTGAGAGGATCAAAATCAACTGGATGAAAGCTGGAATATTAG
AATCAGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTT
TCTGGTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGG
CATTAAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGA
CTGACAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCG
AAGCCTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGA
TAGAAATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAG
GCTCAGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTT
CAGATAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGA
ACAGTTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCA
ATATTCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATT
CCAAGCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTA
TGGAACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGG
CAGAAGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAG
GCTGTGGATCCAG
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