FC868653

Overview
NameFC868653
Unique NameFC868653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_XANC5 (Glycogen synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=glgA PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.249e-34
Identity = 83/229 (36.24%), Postives = 131/229 (57.21%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGFQMGSFSVD 694
            ++++++ GI+ +D V TVS  YA++ ++G  +G  LD ++     K  + GIVNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV +G TGF     SV+
Sbjct:  227 QMSFLRGGIVNADHVNTVSVSYAKQ-ITGPAQGCGLDRLLAGRAAKGALTGIVNGIDAS-WDPRTDEYLDSHFSVNQWQGRQANAAQVRKA-FGLRESTG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGEPEIERQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE 451          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_THET2 (Glycogen synthase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=glgA PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.249e-34
Identity = 80/218 (36.70%), Postives = 128/218 (58.72%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTG 667
            ++N MK GI+ +  V TVSP YA+E+ + E  G+ LD ++R+    ++GI+NG+D + ++P  D Y+   Y        K   KEA +   GL      PV+ ++GRL+ QKG D++  A+P  ++   ++ V G G   +++   + E   PE  R +  ++  +A +  AGA+ +L+PSRFEPCGL+Q+ A RYGT P+  + GGL DTV +G  G
Sbjct:  173 RVNLMKGGIVFARRVTTVSPSYAEEIQTPEF-GMGLDGVLRRHAGKLRGILNGLDTEVFDPGKDPYLPAPYTREDP-SGKARAKEAFRERTGL----RPPVLAYVGRLDYQKGLDLVLKALPRLLEMGFRLYVQGVGDGGLQEAFLRAEEENPEGVRFLPAYDEAMARLAYAGAEAVLVPSRFEPCGLVQMIASRYGTPPVARAVGGLKDTVEDGRAG 384          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_PARUW (Glycogen synthase OS=Protochlamydia amoebophila (strain UWE25) GN=glgA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.249e-34
Identity = 86/225 (38.22%), Postives = 134/225 (59.56%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSG-EDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKY----------DASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKP-MEKQLEQLEILYPEKARG--VAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            IN +K GI+ SD V TVSP+YA+E+++  E +G+E   +  +   KGI+NG+D   WNP  D+++   Y          D +TV D K  +K+ L+ ++ L  + + P+IG I RL  QKG D++   I H +++  Q I+LG+   P +  +  +L+  Y +      +   +  LAH+I AG+D  ++PS FEPCGL Q+ A++YGTVPIV  TGGL DT+ +
Sbjct:  204 INLLKGGIVYSDFVTTVSPNYAKEVLTPKEGRGLEATLVEYQHKFKGILNGIDYSYWNPEIDRFLPAHYSLREMPKNKKDRNTV-DKKGFIKKILREKLYL-AEEHRPIIGCITRLVPQKGIDLIKHTIRHIVEKKGQFILLGSSPIPSINDEFHRLKHQYTDHPHIHLILHHSEELAHLIYAGSDMFIVPSLFEPCGLTQIIALKYGTVPIVRRTGGLADTIID 426          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_ENT38 (Glycogen synthase OS=Enterobacter sp. (strain 638) GN=glgA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.249e-34
Identity = 75/216 (34.72%), Postives = 129/216 (59.72%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG----IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +I+++KAG+  +D +  VSP YA+E+   E  G  ++ ++R+      + GI+NG+D + WNP TD  +  ++   +V D K   K  LQ  +GL V+  +P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P +      ++   +H ++ G+D IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV++
Sbjct:  194 QISFLKAGLYYADHITAVSPTYAREITEPEF-GYGMEGLLRQRQREGRLTGILNGVDEKIWNPETDLLLASRFSRDSVED-KAENKRQLQVAMGLKVNDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRLMGGSDVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_XANAC (Glycogen synthase OS=Xanthomonas axonopodis pv. citri GN=glgA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.549e-34
Identity = 83/229 (36.24%), Postives = 131/229 (57.21%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGFQMGSFSVD 694
            ++++++ GI+ +D V TVS  YA++ ++G  +G  LD ++     K  + GIVNG+D   W+P TD+Y+   +  +     +    +  +A  GL      P+   + RL  QKG D++    P  +    QI V+G G+  +E+Q+ +L   YP +      F   LA  + AGADF+L+PSRFEPCGL Q++A R+G +PI  +TGGL+DTV +G TGF     SV+
Sbjct:  192 QMSFLRGGIVNADHVNTVSVSYAKQ-ITGPAQGCGLDRLLAGRAAKGALTGIVNGIDAS-WDPRTDQYLDSHFSVNQWQGRQANAAQVRKA-FGLRESAG-PLFAVVSRLVHQKGLDLICEVAPQIVAAGGQIAVIGGGEPEIEQQVAELTRRYPGQVGAFIGFEEGLARRMFAGADFLLMPSRFEPCGLSQMYAQRFGCLPIAHATGGLIDTVDDGVTGFLFQHASVE 416          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_RHILO (Glycogen synthase OS=Rhizobium loti GN=glgA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.549e-34
Identity = 85/213 (39.91%), Postives = 126/213 (59.15%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            + ++KAG+  +  + TVSP YAQE+ S E  G+ LD +I  R + + GIVNG+D   W+P TDK++   Y A+T+    P  + A++   GL  D + P++  I RL  QKG DILA  I   +    ++ +LG+G   +E  L      +  +   V  ++  L+H +  G D I+IPSRFEPCGL QL+ +RYG VP+VA TGGL DT+ +
Sbjct:  197 VGFLKAGLQAAWAITTVSPTYAQEIRSPEF-GMGLDGLINMRSSDLYGIVNGIDTAIWDPETDKHLVSNYTATTLKARAPN-RAAVEERFGLDRDDS-PIVCVISRLTWQKGMDILATVIDGIVATGARLAILGSGDAGLEGALLAAAARHRGRIGVVIGYDEGLSHTMQGGCDAIIIPSRFEPCGLTQLYGLRYGCVPVVARTGGLADTIID 406          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_KLEP3 (Glycogen synthase OS=Klebsiella pneumoniae (strain 342) GN=glgA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.549e-34
Identity = 76/216 (35.19%), Postives = 127/216 (58.80%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG----IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +I+++KAG+  +D +  VSP YA+E+   +     ++ ++R+      + GI+NG+D   W+P  D  + ++YD  T ++ K   K  LQ  +GL VD   P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P K      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV++
Sbjct:  194 QISFLKAGLYYADHITAVSPTYAREITEPQ-YAYGMEGLLRQRHHEGRLSGILNGVDDGIWSPQNDLLLPMRYDRDT-LEEKAENKRQLQIAMGLKVDDKAPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGKVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_ERWCT (Glycogen synthase OS=Erwinia carotovora subsp. atroseptica GN=glgA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.549e-34
Identity = 79/216 (36.57%), Postives = 123/216 (56.94%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR----KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +I+++KAG+  +D + TVSP YA E+      G  ++ +++    +  + GI+NG+D   WNP  D  +   Y    + + K   K  LQ  +GL VD   PV   + RL  QKG DI  +AIP  +++  Q++VLG G   +++        Y  +      ++   +H II GAD I++PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV++
Sbjct:  194 QISYLKAGLFYADHITTVSPTYAHEITLPA-YGYGMEGLLKTREEEGRLSGILNGVDETIWNPTHDPLLTNHYSREALAN-KAENKRHLQTAMGLKVDDKAPVFAIVSRLTSQKGLDIALSAIPDLLEQGGQLVVLGAGDADLQEGFLAAAAEYHGQVGVQIGYHEAFSHRIIGGADVIMVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_THET8 (Glycogen synthase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=glgA PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.248e-34
Identity = 80/218 (36.70%), Postives = 128/218 (58.72%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTG 667
            ++N MK GI+ +  V TVSP YA+E+ + E  G+ LD ++R+    ++GI+NG+D + ++P  D Y+   Y        K   KEA +   GL      PV+ ++GRL+ QKG D++  A+P  ++   ++ V G G   +++   + E   PE  R +  ++  +A +  AGA+ +L+PSRFEPCGL+Q+ A RYGT P+  + GGL DTV +G  G
Sbjct:  173 RVNLMKGGIVFARRVTTVSPSYAEEIQTPEF-GMGLDGVLRRHAGKLRGILNGLDTEVFDPGKDPYLPAPYTREDP-SGKARAKEAFRERTGL----RPPVLAYVGRLDYQKGLDLVLKALPRLLEMGFRLYVQGVGDGGLQEAFLRAEEENPEGVRFLPAYDEAMARLAYAGAEAVLVPSRFEPCGLVQMIASRYGTPPVARAVGGLKDTVEDGRGG 384          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_SULSY (Glycogen synthase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=glgA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.248e-34
Identity = 90/214 (42.06%), Postives = 120/214 (56.07%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            K+N++K GI+ S  + TVSP YA+E+   E  G  LD ++RK   K  GI+NG+D   WNP TDKYI   Y   T+   K + K+    EVGL  D   P+  FIGRL  QKG D++  +I    K      +LGTG K      + +E  Y E       +N   +  + A ADF+L+PS FEPCGL Q+ AMRYGT+ +   TGGL DTV +
Sbjct:  196 KVNFLKGGIVFSSAITTVSPTYAKEITFPE-YGYGLDGVLRKYSNKLYGILNGIDYDVWNPETDKYIYENYCVFTIQK-KSINKKLFLKEVGLK-DEAKPLYIFIGRLAHQKGVDLIRDSIEEMSKMPANFAILGTGDKGYNDFFKSIEGKY-ENIFIKVDYNEAFSRKMYAAADFLLMPSLFEPCGLNQMIAMRYGTLVVARDTGGLKDTVKD 405          
The following BLAST results are available for this feature:
BLAST of FC868653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_XANC54.249e-3436.24Glycogen synthase OS=Xanthomonas campestris pv. ve... [more]
GLGA_THET24.249e-3436.70Glycogen synthase OS=Thermus thermophilus (strain ... [more]
GLGA_PARUW4.249e-3438.22Glycogen synthase OS=Protochlamydia amoebophila (s... [more]
GLGA_ENT384.249e-3434.72Glycogen synthase OS=Enterobacter sp. (strain 638)... [more]
GLGA_XANAC5.549e-3436.24Glycogen synthase OS=Xanthomonas axonopodis pv. ci... [more]
GLGA_RHILO5.549e-3439.91Glycogen synthase OS=Rhizobium loti GN=glgA PE=3 S... [more]
GLGA_KLEP35.549e-3435.19Glycogen synthase OS=Klebsiella pneumoniae (strain... [more]
GLGA_ERWCT5.549e-3436.57Glycogen synthase OS=Erwinia carotovora subsp. atr... [more]
GLGA_THET87.248e-3436.70Glycogen synthase OS=Thermus thermophilus (strain ... [more]
GLGA_SULSY7.248e-3442.06Glycogen synthase OS=Sulfurihydrogenibium sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionC31003B03EF AbioticL1 Citrus clementina cDNA clone C31003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868653 ID=FC868653; Name=FC868653; organism=Citrus clementina; type=EST; length=713bp
ATAAACCTGTGAGAGGATCAAAATCAACTGGATGAAAGCTGGAATATTAG
AATCAGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTT
TCTGGTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGG
CATTAAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGA
CTGACAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCG
AAGCCTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGA
TAGAAATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAG
GCTCAGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTT
CAGATAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGA
ACAGTTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCA
ATATTCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATT
CCAAGCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTA
TGGAACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGG
CAGAAGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAG
GCTGTGGATCCAG
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