FC868653

Overview
NameFC868653
Unique NameFC868653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_SALNS (Glycogen synthase OS=Salmonella newport (strain SL254) GN=glgA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.754e-33
Identity = 73/216 (33.80%), Postives = 129/216 (59.72%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG----IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +++++KAG+  +D +  VSP YA+E+   +     ++ ++R+  ++G    I+NG+D + WNP +D  +  +Y   T ++ K   K  LQ  +GL V+  +P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P +      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV++
Sbjct:  194 QLSFLKAGLYYADHITAVSPTYAREITEPQF-AYGMEGLLRQRHLEGRLSGILNGVDEKIWNPESDLLLASRYTRDT-LEEKAENKRQLQIAMGLKVNDKVPLFAVVSRLTNQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_SALHS (Glycogen synthase OS=Salmonella heidelberg (strain SL476) GN=glgA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.754e-33
Identity = 73/216 (33.80%), Postives = 129/216 (59.72%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG----IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +++++KAG+  +D +  VSP YA+E+   +     ++ ++R+  ++G    I+NG+D + WNP +D  +  +Y   T ++ K   K  LQ  +GL V+  +P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P +      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV++
Sbjct:  194 QLSFLKAGLYYADHITAVSPTYAREITEPQF-AYGMEGLLRQRHLEGRLSGILNGVDEKIWNPESDLLLASRYTRDT-LEEKAENKRQLQIAMGLKVNDKVPLFAVVSRLTNQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_SALEP (Glycogen synthase OS=Salmonella enteritidis PT4 (strain P125109) GN=glgA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.754e-33
Identity = 73/216 (33.80%), Postives = 129/216 (59.72%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG----IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +++++KAG+  +D +  VSP YA+E+   +     ++ ++R+  ++G    I+NG+D + WNP +D  +  +Y   T ++ K   K  LQ  +GL V+  +P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P +      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV++
Sbjct:  194 QLSFLKAGLYYADHITAVSPTYAREITEPQF-AYGMEGLLRQRHLEGRLSGILNGVDEKIWNPESDLLLASRYTRDT-LEEKAENKRQLQIAMGLKVNDKVPLFAVVSRLTNQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_SALDC (Glycogen synthase OS=Salmonella dublin (strain CT_02021853) GN=glgA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.754e-33
Identity = 73/216 (33.80%), Postives = 129/216 (59.72%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG----IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +++++KAG+  +D +  VSP YA+E+   +     ++ ++R+  ++G    I+NG+D + WNP +D  +  +Y   T ++ K   K  LQ  +GL V+  +P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P +      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV++
Sbjct:  194 QLSFLKAGLYYADHITAVSPTYAREITEPQF-AYGMEGLLRQRHLEGRLSGILNGVDEKIWNPESDLLLASRYTRDT-LEEKAENKRQLQIAMGLKVNDKVPLFAVVSRLTNQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_SALCH (Glycogen synthase OS=Salmonella choleraesuis GN=glgA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.754e-33
Identity = 73/216 (33.80%), Postives = 129/216 (59.72%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG----IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +++++KAG+  +D +  VSP YA+E+   +     ++ ++R+  ++G    I+NG+D + WNP +D  +  +Y   T ++ K   K  LQ  +GL V+  +P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P +      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV++
Sbjct:  194 QLSFLKAGLYYADHITAVSPTYAREITEPQF-AYGMEGLLRQRHLEGRLSGILNGVDEKIWNPESDLLLASRYKRDT-LEEKAENKRQLQIAMGLKVNDKVPLFAVVSRLTNQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_SALA4 (Glycogen synthase OS=Salmonella agona (strain SL483) GN=glgA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.754e-33
Identity = 73/216 (33.80%), Postives = 129/216 (59.72%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG----IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +++++KAG+  +D +  VSP YA+E+   +     ++ ++R+  ++G    I+NG+D + WNP +D  +  +Y   T ++ K   K  LQ  +GL V+  +P+   + RL  QKG D++  A+P  +++  Q+ +LG G   +++        +P +      ++   +H I+ GAD IL+PSRFEPCGL QL+ ++YGT+P+V  TGGL DTV++
Sbjct:  194 QLSFLKAGLYYADHITAVSPTYAREITEPQF-AYGMEGLLRQRHLEGRLSGILNGVDEKIWNPESDLLLASRYTRDT-LEEKAENKRQLQIAMGLKVNDKVPLFAVVSRLTNQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_DEIDV (Glycogen synthase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=glgA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.754e-33
Identity = 86/212 (40.57%), Postives = 119/212 (56.13%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVS---GEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            +N MKAG++ ++ V TVSP YA+E+ +   GE     L  +  +  + GI+NG+D + WNP TD  +    D +     K    +AL+ E GL      PV+G + RL +QKG D+L  A+P  +  N  ++VLG G   +   LE        +       N  LAH I AG+D   +PSRFEPCGL Q+ AMRYGT+P+V  TGGLVDTV
Sbjct:  181 LNLMKAGLIAANHVTTVSPQYAREITTQQYGEGLQGVLLRLTLEGRLSGIINGLDQERWNPRTDPDVPAYSDLA----GKAAATQALRTEFGLD---KAPVLGVVSRLADQKGMDLLIEALPRLV-HNWNVVVLGGGDPLLTAALEGWA--QHPRVSFAQGMNEALAHQIYAGSDAFAMPSRFEPCGLSQMIAMRYGTLPVVRETGGLVDTV 382          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA2_RHIME (Glycogen synthase 2 OS=Rhizobium meliloti GN=glgA2 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.754e-33
Identity = 82/213 (38.50%), Postives = 124/213 (58.22%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            I ++K G+  +D +  VSP YA+E++S    G+ L+ ++  R   + GIVNG+D++ W+P +D  I   Y A   +   P  ++ L    GLP D   P+   + RL  QKG D+LAA     +K    +I+ G G++ +E     L   +P+       ++  LAH I AGAD +L+PSRFEPCGL QL+A+RYG VP+VA TGGL +T+ +
Sbjct:  197 IGFLKGGLQAADAITVVSPTYAREIMSPAF-GMGLEGVMNERHADVVGIVNGIDLEVWDPSSDPCIEHHYSARVPLRRLPN-RQVLLRHFGLP-DTCGPIFASVNRLTWQKGMDLLAATAGEIVKNGGTLIIHGQGEEKLEAAFMDLMRRFPQNISVSIGYDEHLAHRIHAGADAMLVPSRFEPCGLTQLYALRYGCVPVVARTGGLSETIID 406          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_SYNS3 (Glycogen synthase OS=Synechococcus sp. (strain CC9311) GN=glgA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.597e-33
Identity = 80/209 (38.28%), Postives = 124/209 (59.33%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            M A +L +D V  VSP Y++E+ + E    +LD ++      ++GI+NG+D++ WNP TD+ +   + A   +  +   K+ LQ  +GL V  +  ++G + RL +QKG D+L       +   + QI+VLGTG + +E  L Q+   +P +      ++  L+ +I AG+D  L+PSRFEPCG+ QL AMRYG VP+V   GGLVDTV
Sbjct:  180 MAAALLYADGVNAVSPTYSREIRTSE-YSEKLDGLLNYISGKLRGILNGIDLEAWNPATDRALPATFSADD-LSGRARNKQVLQERMGLEVRPDAYLLGMVSRLVDQKGVDLLLQVADRLLAYTDTQIVVLGTGDRGLESGLWQMASRHPGRVSVFLTYDDDLSRLIYAGSDAFLMPSRFEPCGISQLLAMRYGCVPVVRKVGGLVDTV 386          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_PROM0 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9301) GN=glgA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.597e-33
Identity = 83/209 (39.71%), Postives = 124/209 (59.33%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            M A +L +D V  VSP YA E+ + E  G  L+ ++      ++GI+NG+D+ EWNP  D  +  K+  +  ++ +   K+ LQ E+GL V+    ++G + RL +QKG D+L       +   + QI VLGTG + +E  L QL + YP +      ++  L+ +I  G+D  L+PSRFEPCG+ QL AMRYG++PIV   GGLVDTV
Sbjct:  180 MAAAMLYADRVNAVSPTYADEIKTHE-YGESLEGLLNYISGKLRGILNGIDLDEWNPAKDSVLPAKFSINN-LENRQENKKILQREMGLEVNPKKYLLGMVSRLVDQKGVDLLLQVSRRLLAYTDSQIAVLGTGDRYLESGLWQLALDYPGRFSVFLTYDDSLSRLIYGGSDAFLMPSRFEPCGISQLLAMRYGSIPIVRRVGGLVDTV 386          
The following BLAST results are available for this feature:
BLAST of FC868653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_SALNS2.754e-3333.80Glycogen synthase OS=Salmonella newport (strain SL... [more]
GLGA_SALHS2.754e-3333.80Glycogen synthase OS=Salmonella heidelberg (strain... [more]
GLGA_SALEP2.754e-3333.80Glycogen synthase OS=Salmonella enteritidis PT4 (s... [more]
GLGA_SALDC2.754e-3333.80Glycogen synthase OS=Salmonella dublin (strain CT_... [more]
GLGA_SALCH2.754e-3333.80Glycogen synthase OS=Salmonella choleraesuis GN=gl... [more]
GLGA_SALA42.754e-3333.80Glycogen synthase OS=Salmonella agona (strain SL48... [more]
GLGA_DEIDV2.754e-3340.57Glycogen synthase OS=Deinococcus deserti (strain V... [more]
GLGA2_RHIME2.754e-3338.50Glycogen synthase 2 OS=Rhizobium meliloti GN=glgA2... [more]
GLGA_SYNS33.597e-3338.28Glycogen synthase OS=Synechococcus sp. (strain CC9... [more]
GLGA_PROM03.597e-3339.71Glycogen synthase OS=Prochlorococcus marinus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC31003B03EF AbioticL1 Citrus clementina cDNA clone C31003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868653 ID=FC868653; Name=FC868653; organism=Citrus clementina; type=EST; length=713bp
ATAAACCTGTGAGAGGATCAAAATCAACTGGATGAAAGCTGGAATATTAG
AATCAGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTT
TCTGGTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGG
CATTAAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGA
CTGACAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCG
AAGCCTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGA
TAGAAATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAG
GCTCAGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTT
CAGATAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGA
ACAGTTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCA
ATATTCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATT
CCAAGCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTA
TGGAACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGG
CAGAAGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAG
GCTGTGGATCCAG
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