FC868653

Overview
NameFC868653
Unique NameFC868653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_THEAB (Glycogen synthase OS=Thermosipho africanus (strain TCF52B) GN=glgA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.839e-45
Identity = 98/214 (45.79%), Postives = 141/214 (65.89%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            KIN++K GIL SD++ TVSP YAQE+ + E  G +LD ++R   + + GI+NG+D  E+NP TDK I V Y    + + K   K+ LQ E+ LP   ++PVIG I RL +QKG DIL+  + + +  +VQ ++LGTG K  E+  + +E  +P+K      F+I LA  I A +D  L+PSR+EPCGL Q++++RYGT+P+V  TGGL DTV E
Sbjct:  202 KINFLKGGILFSDVINTVSPTYAQEIQTKE-YGEKLDGVLRLRSSDLYGILNGIDYDEYNPETDKRIYVNYSLQEI-EKKYENKKMLQKELNLPQTNDVPVIGMITRLVDQKGLDILSEVLRYILNMDVQFVLLGTGDKKYEEMFKDIEKEFPDKMSANITFDIVLAQKIYASSDMFLMPSRYEPCGLGQMYSLRYGTIPVVRYTGGLADTVME 413          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_ANAD2 (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glgA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.402e-45
Identity = 97/223 (43.50%), Postives = 143/223 (64.13%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGFQMGS 682
            ++++MKAG+  +D + TVSP YA+E+++ E  G  LD ++R     + GI+NG+DV  W+P  D ++   + A   +  K   K ALQ EVGLPV   +PV G + RL EQKG D++AAA+P  +  +VQ+++LG+G    E+   +    +P++      F+  LAH I AGAD  L+PSRFEPCGL Q++++RYGTVP+V + GGL DTV E F GF  G+
Sbjct:  197 QLSFMKAGLAFADALTTVSPTYAREILTPEG-GASLDALLRHRARDLHGILNGIDVHAWDPARDPHLPAHFGAGD-LTGKAACKAALQREVGLPVRPEVPVAGLVTRLAEQKGIDLVAAALPALLARDVQVVLLGSGDAAYEQAFARAAREHPDRVAARIGFDEGLAHRIEAGADLFLMPSRFEPCGLNQMYSLRYGTVPVVRAVGGLADTV-EDFDGFARGT 416          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_ANADE (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=glgA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.096e-45
Identity = 97/223 (43.50%), Postives = 143/223 (64.13%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAEGFTGFQMGS 682
            ++++MKAG+  +D + TVSP YA+E+++ E  G  LD ++R     + GI+NG+DV  W+P  D ++   +    +   K   K ALQ EVGLPV R+ P+ G + RL EQKG D++AAA+P  +  +VQ+++LG+G    E+   +    +P++      F+  LAH I AGAD  L+PSRFEPCGL Q++++RYGTVP+V S GGL DTV E F GF  G+
Sbjct:  197 QLSFMKAGLAFADALTTVSPTYAREILTPEG-GASLDALLRHRARDLHGILNGIDVHAWDPARDPHLPAHFTPGELA-GKAACKAALQREVGLPVRRDAPLAGLVTRLAEQKGIDLVAAALPALLARDVQVVLLGSGDPAYEEAFARAAREHPDRVAARIGFDEGLAHRIEAGADLFLMPSRFEPCGLNQMYSLRYGTVPVVRSVGGLADTV-EDFDGFARGT 416          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA2_NITOC (Glycogen synthase 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgA2 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.096e-45
Identity = 95/214 (44.39%), Postives = 137/214 (64.02%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            +I+++K G++ +D + TVSP YA+E+++ E  G  LD ++R     + GI+NG D Q W+P  D +I  +YD  T    K   K ALQ   GLP D  +PV+GF+GRL EQKG D++  A+P  + E +Q++ LG G++  +  L+QL   YP +      ++  LAH + AGAD  L+PSRFEPCGL QL+A+RYGTVPI   TGGL DT+ +
Sbjct:  199 QISFIKGGLVFADWLTTVSPTYAKEILTPEF-GCGLDGVLRGRSKRLTGILNGADYQRWDPRHDPFIEKRYD-QTCWSHKASNKLALQRRYGLPEDDTLPVLGFVGRLVEQKGIDLILGALPKLLAEKIQVVFLGEGEERHQNALQQLASRYPNQIGVSISYDERLAHGVQAGADIFLMPSRFEPCGLTQLYALRYGTVPIARRTGGLSDTIVD 410          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_THEMA (Glycogen synthase OS=Thermotoga maritima GN=glgA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.350e-45
Identity = 96/214 (44.86%), Postives = 140/214 (65.42%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            ++N++K GI+ SD++ TVSP YA+E+ + E+ G +LD ++R     + GI+NG+D + +NP TD+YI V YD +  ++ K   K  LQ E+GLPV++   V G I RL  QKG D+L   + +    ++QI+VLGTG +  E    + +  YP+K     KF++ LA  I AGAD  L+PSR+EPCGL Q+ +MRYGT+P+V  TGGL DTV E
Sbjct:  202 QLNFLKGGIVFSDVINTVSPTYAEEIQT-EEYGEKLDGVLRMRSKDLYGILNGIDYELYNPATDRYIYVNYDVNR-LELKWENKVKLQEELGLPVNKETAVAGLISRLVPQKGLDLLVDVMDYLTLFDLQIVVLGTGDEQYENAFRKFQERYPDKVSANIKFDVELAQKIYAGADIFLMPSRYEPCGLGQMFSMRYGTIPVVRYTGGLADTVKE 413          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_THESQ (Glycogen synthase OS=Thermotoga sp. (strain RQ2) GN=glgA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.126e-45
Identity = 95/214 (44.39%), Postives = 141/214 (65.89%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            ++N++K GI+ SD++ TVSP YA+E+ + E+ G +L+ ++R     + GI+NG+D + +NP TD+YI V YD +  ++ K   K  LQ E+GLPV++   V G I RL  QKG D+L   + + +  ++QI+VLGTG +  E    + +  YP+K     KF++ LA  I AGAD  L+PSR+EPCGL Q+ +MRYGT+P+V  TGGL DTV E
Sbjct:  202 QLNFLKGGIVFSDVINTVSPTYAEEIQT-EEYGEKLEGVLRMRSKDLYGILNGIDYELYNPATDRYIYVNYDVNR-LELKWENKVKLQEELGLPVNKETAVAGLISRLVPQKGLDLLVDVMDYLMLFDLQIVVLGTGDEQYENAFRKFQERYPDKVSANIKFDVELAQKIYAGADIFLMPSRYEPCGLGQMFSMRYGTIPVVRYTGGLADTVKE 413          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_THEP1 (Glycogen synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glgA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.126e-45
Identity = 95/214 (44.39%), Postives = 141/214 (65.89%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            ++N++K GI+ SD++ TVSP YA+E+ + E+ G +L+ ++R     + GI+NG+D + +NP TD+YI V YD +  ++ K   K  LQ E+GLPV++   V G I RL  QKG D+L   + + +  ++QI+VLGTG +  E    + +  YP+K     KF++ LA  I AGAD  L+PSR+EPCGL Q+ +MRYGT+P+V  TGGL DTV E
Sbjct:  202 QLNFLKGGIVFSDVINTVSPTYAEEIQT-EEYGEKLEGVLRMRSKDLYGILNGIDYELYNPATDRYIYVNYDVNR-LELKWENKVKLQEELGLPVNKETAVAGLISRLVPQKGLDLLVDVMDYLMLFDLQIVVLGTGDEQYENAFRKFQERYPDKVSANIKFDVELAQKIYAGADIFLMPSRYEPCGLGQMFSMRYGTIPVVRYTGGLADTVKE 413          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: SSY22_ORYSJ (Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.192e-44
Identity = 99/215 (46.05%), Postives = 138/215 (64.19%), Query Frame = 2
Query:   26 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIG----VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVA 652
            N   AG+  +D  +TVS  Y  E+ +  D G  L  II      ++GIVNG+D+ EWNP  D+++       Y   T+   K   KEALQ ++GL V  ++P+IGFIGRL+ QKG DI+  A+P    ++VQ+++LGTG+  +E+ L + E  + +K RG   F++ LAH I AGAD +L+PSRFEPCGL QL+AM YGTVP+V + GGL DTVA
Sbjct:  409 NVFAAGLKMADRAVTVSHGYLWEIKT-MDGGWGLHEIINHNDWKLQGIVNGIDMAEWNPEVDEHLQSDGYANYTFETLDTGKKQCKEALQRQLGLQVRDDVPLIGFIGRLDHQKGVDIIGDAMPWIAGQDVQVVMLGTGRPDLEEMLRRFESEHNDKVRGWVGFSVQLAHRITAGADVLLMPSRFEPCGLNQLYAMAYGTVPVVHAVGGLRDTVA 622          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_STRSV (Glycogen synthase OS=Streptococcus sanguinis (strain SK36) GN=glgA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.468e-44
Identity = 105/231 (45.45%), Postives = 138/231 (59.74%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------AEGFTGFQMGSFS 688
            +NWMKAGIL +D V TVSP YA E+ + E  G  LD I+R    K  GIVNG+D   +NP TD  +   +D S  +  K   K ALQ  VGLPV  ++PV+G + RL  QKG D++   + + ++E+VQII+LGTG    E+        YP+K      F++ LA  I A +D  L+PSRFEPCGL Q+ AMRYGT+P+V   GGL DTV        +G TGF   +FS
Sbjct:  198 LNWMKAGILYADRVTTVSPSYASEIRTPEF-GCNLDQILRMESGKLVGIVNGIDTDIYNPETDPLLAHHFDKSD-LSGKLENKRALQERVGLPVRDDVPVVGIVSRLTRQKGFDLVVEELHNLLQEDVQIILLGTGDPAFEQAFAWFGHAYPDKLSANILFDVTLAQEIYAASDIFLMPSRFEPCGLSQMMAMRYGTLPLVHEVGGLRDTVEPYNVYTGKG-TGFSFNNFS 425          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_STRGC (Glycogen synthase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=glgA PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.468e-44
Identity = 104/231 (45.02%), Postives = 140/231 (60.61%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV-------AEGFTGFQMGSFS 688
            +NWMKAGIL +D V TVSP YA E+ + E  G  LD I+R    K  GIVNG+D + +NP TD  +   +D S  +  K   K ALQ  VGLPV  ++P++G + RL  QKG D++   + +F++++VQII+LGTG    E+        YP+K      F++ LA  I A +D  L+PSRFEPCGL Q+ AMRYGT+P+V   GGL DTV        +G TGF   +FS
Sbjct:  198 LNWMKAGILYADRVTTVSPSYAGEIRTPEF-GCNLDQILRMESGKLVGIVNGIDTEIYNPETDPLLAHHFDKSD-LSGKLENKRALQERVGLPVRDDVPLVGIVSRLTRQKGFDLVVEELHNFLQQDVQIILLGTGDPAFEQAFAWFGQAYPDKLSANILFDVGLAQEIYAASDIFLMPSRFEPCGLSQMMAMRYGTLPLVHEVGGLRDTVEPYNVYTGQG-TGFSFNNFS 425          
The following BLAST results are available for this feature:
BLAST of FC868653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_THEAB1.839e-4545.79Glycogen synthase OS=Thermosipho africanus (strain... [more]
GLGA_ANAD22.402e-4543.50Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]
GLGA_ANADE4.096e-4543.50Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]
GLGA2_NITOC4.096e-4544.39Glycogen synthase 2 OS=Nitrosococcus oceani (strai... [more]
GLGA_THEMA5.350e-4544.86Glycogen synthase OS=Thermotoga maritima GN=glgA P... [more]
GLGA_THESQ9.126e-4544.39Glycogen synthase OS=Thermotoga sp. (strain RQ2) G... [more]
GLGA_THEP19.126e-4544.39Glycogen synthase OS=Thermotoga petrophila (strain... [more]
SSY22_ORYSJ1.192e-4446.05Soluble starch synthase 2-2, chloroplastic/amylopl... [more]
GLGA_STRSV3.468e-4445.45Glycogen synthase OS=Streptococcus sanguinis (stra... [more]
GLGA_STRGC3.468e-4445.02Glycogen synthase OS=Streptococcus gordonii (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003B03EF AbioticL1 Citrus clementina cDNA clone C31003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868653 ID=FC868653; Name=FC868653; organism=Citrus clementina; type=EST; length=713bp
ATAAACCTGTGAGAGGATCAAAATCAACTGGATGAAAGCTGGAATATTAG
AATCAGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTT
TCTGGTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGG
CATTAAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGA
CTGACAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCG
AAGCCTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGA
TAGAAATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAG
GCTCAGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTT
CAGATAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGA
ACAGTTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCA
ATATTCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATT
CCAAGCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTA
TGGAACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGG
CAGAAGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAG
GCTGTGGATCCAG
back to top