FC868653

Overview
NameFC868653
Unique NameFC868653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_PROMS (Glycogen synthase OS=Prochlorococcus marinus (strain AS9601) GN=glgA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.013e-33
Identity = 83/209 (39.71%), Postives = 123/209 (58.85%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            M A +L +D V  VSP YA E+ + E  G  L+ ++      ++GI+NG+D+ EWNP  D  +  K+     ++ +   K+ LQ E+GL V+    ++G + RL +QKG D+L       +   + QI VLGTG + +E  L QL + YP +      ++  L+ +I  G+D  L+PSRFEPCG+ QL AMRYG++PIV   GGLVDTV
Sbjct:  180 MAAAMLYADRVNAVSPTYADEIKTHE-YGESLEGLLNYISGKLRGILNGIDLDEWNPAKDPVLPAKFSIKN-LENRLENKKILQREMGLEVNSKKYLLGMVSRLVDQKGVDLLLQVSRRLLAYTDSQIAVLGTGDRYLESGLWQLALDYPGRFSVFLTYDDSLSRLIYGGSDAFLMPSRFEPCGISQLLAMRYGSIPIVRRVGGLVDTV 386          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_PROM2 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9215) GN=glgA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.013e-33
Identity = 83/209 (39.71%), Postives = 123/209 (58.85%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            M A +L +D V  VSP YA E+ + E  G  L+ ++      ++GI+NG+D+ EWNP  D  +  K+     ++ +   K+ LQ E+GL V+    ++G + RL +QKG D+L       +   + QI VLGTG + +E  L QL + YP +      ++  L+ +I  G+D  L+PSRFEPCG+ QL AMRYG++PIV   GGLVDTV
Sbjct:  180 MAAAMLYADRVNAVSPTYADEIKTHE-YGESLEGLLNYISGKLRGILNGIDLDEWNPAKDPVLPAKFSIKN-LENRLENKKILQREMGLEVNSKKYLLGMVSRLVDQKGVDLLLQVSRRLLAYTDSQIAVLGTGDRYLESGLWQLALDYPGRFSVFLTYDDSLSRLIYGGSDAFLMPSRFEPCGISQLLAMRYGSIPIVRRVGGLVDTV 386          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_PROVI (Glycogen synthase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=glgA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.047e-32
Identity = 71/211 (33.65%), Postives = 118/211 (55.92%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            +N +  G+  +DM+ T SP YA+E+         L  ++  R   + GIVNG+D ++WNP TDK I  +Y A   M+ K   K AL  E+ L  D + PV+G I   +E +G+ ++A ++      ++Q+++ G+G +  EKQ  +    +PE             H+ IAG D +L+P + E CG++Q+ AM YGT+P+  + GG+V+T+
Sbjct:  211 VNMLYTGVEHADMLTTTSPSYAEEITGEAGNAFGLSEVLGERNMTLHGIVNGIDTRQWNPSTDKLIKKRY-APERMEGKTENKRALLEEIKLSPDTDRPVVGVIINFDEFQGAGLIAGSLKKLAAMDIQLVICGSGDQKYEKQFREFADAHPETVSLHTDCPDSFIHLAIAGFDILLMPGKIESCGMLQMFAMSYGTIPVAFAGGGIVETI 420          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_PROM5 (Glycogen synthase OS=Prochlorococcus marinus (strain MIT 9515) GN=glgA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.047e-32
Identity = 82/209 (39.23%), Postives = 124/209 (59.33%), Query Frame = 2
Query:   32 MKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            M A +L +D V  VSP YA E+ + E  G  LD ++      ++GI+NG+D+ EW+P  DK +  +++    ++ +   K  LQ E+GL V+    ++G + RL +QKG D++       +   + QI +LGTG K +E  L QL + YP +      ++  L+ +I  G+D  L+PSRFEPCG+ QL AMRYG++PIV   GGLVDTV
Sbjct:  180 MAAAMLYADRVNAVSPTYADEIKTHE-YGESLDGLLNYISGKLRGILNGIDLNEWDPNIDKVLPAQFNIKN-LERRSENKIILQKEMGLEVNSKKYLLGMVSRLVDQKGVDLVLQVSKRLLAYTDSQIAILGTGDKYLESGLWQLALDYPGRFSVFLTYDDSLSRLIYGGSDAFLMPSRFEPCGISQLLAMRYGSIPIVRRVGGLVDTV 386          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_PELPB (Glycogen synthase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.785e-32
Identity = 72/218 (33.03%), Postives = 122/218 (55.96%), Query Frame = 2
Query:    8 CERIKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIK--GIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            C   ++N +  G+  +D++ T S  YA+E+V    +   L  ++ +   K  GI+NG+D ++WN   DK I  +Y     MD K   K+AL  E GLP     PV+G I   +E +G+++L  ++      ++Q+I+ G+G K  EK  +   + +PE+     +++    H+ IAG D +L+P   E CG+IQ+ AM YGT+P+  + GG+V+T+ E
Sbjct:  206 CSNDEVNMLYTGVEHADLLTTTSKVYAEEIVHDGLQTYGLGRVLEEHQAKFYGILNGIDSRQWNSAADKLIKKRYSLEH-MDGKLDNKKALLEEAGLPYTEGTPVVGVILNFDEFQGAELLQQSLEQLAALDIQLIISGSGDKKYEKVFQDFALEHPEQVSVHGEYSDSFFHLAIAGLDILLMPGMIESCGMIQMFAMNYGTIPVAYAGGGIVETIEE 422          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_BORBR (Glycogen synthase OS=Bordetella bronchiseptica GN=glgA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.785e-32
Identity = 82/217 (37.79%), Postives = 130/217 (59.91%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIG-VKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK--ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            ++N++KAGI  +  V TVS  YA+E+++    G  L  ++R  G  +  + NG+D   WNP  D ++G +++DA  + + K   K ALQAE+GL +  +  V+    RL  QK +D+  AA+P  ++  E++Q  ++G G+  +E  L  L   YP +      ++ PLAH + AGAD +L  SRFEP GL  L+AMRYGT+P+ +  GG+VDT+ +
Sbjct:  204 RVNFLKAGIRYATRVTTVSRAYAREILTPAF-GCGLHGLLRARGADLSPVPNGIDTALWNPAADPHLGGLRFDALDMRN-KACCKAALQAELGLQLRADATVLAMGSRLTGQKMADVAIAALPALLEAHEHLQFALIGRGEPDLEAALRALAARYPGRCAVHIGYDEPLAHRLHAGADLLLHGSRFEPFGLTPLYAMRYGTLPVASRVGGMVDTIRD 418          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA1_SYNJB (Glycogen synthase 1 OS=Synechococcus sp. GN=glgA1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.785e-32
Identity = 85/214 (39.72%), Postives = 129/214 (60.28%), Query Frame = 2
Query:   23 INWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGV---AKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 649
            +N+MK GI+ S+ V TVSP++A E+  G D G  L + +   +   +G++NG+D   WNP  D++I V+Y A T ++ K   K+AL+  + L  D + P++ +IGRL+EQKG  ++  AI   + +N Q ++LG+  +         E  Y      V     FN  L+H+I AGAD I++PS +EPCGL Q+  ++YGTVP+V   GGLVDTV
Sbjct:  205 LNFMKGGIVFSNFVTTVSPNHALEVQFG-DYGYGLGHTLYLHRHKFRGVLNGIDYDIWNPEIDRFIPVRYTAQT-LENKAKNKKALRDRLLLQ-DVDKPIVAYIGRLDEQKGVHLVHHAIYRSLFKNAQFVLLGSATERGIGAWFAHEKSYLNNNPDVHIELGFNEELSHLIYAGADIIVVPSHYEPCGLTQMIGLKYGTVPVVRGVGGLVDTV 415          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_THEEB (Glycogen synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=glgA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.332e-32
Identity = 81/212 (38.21%), Postives = 128/212 (60.38%), Query Frame = 2
Query:   26 NWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTG--IKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK-ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVA 652
            N M A +  +D V TVSP YA+++ + E  G +L+ ++      + GI+NG+D + ++P +D+ +   Y A T ++ +   K ALQ E+GL V+    ++G + RL EQKG D+L   +  F+   + Q ++LGTG +  E Q+ Q+   +P +      ++  L+  I  GAD  ++PSRFEPCG+ Q+ A+RYG VPIV  TGGLVDTV+
Sbjct:  178 NTMAAALQYADRVNTVSPTYAEQIKTPE-YGEKLEGLLSFISGKLSGILNGIDTELFDPSSDRALAQNYTADT-LERRRANKIALQEELGLEVNSGAFLVGMVSRLVEQKGLDLLIQILDRFLAYTDSQFVLLGTGDRYYETQMWQIASRFPGRCSVQLLYSDVLSRRIYGGADAFIMPSRFEPCGISQMIALRYGCVPIVRRTGGLVDTVS 387          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_RALSO (Glycogen synthase OS=Ralstonia solanacearum GN=glgA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.332e-32
Identity = 82/230 (35.65%), Postives = 131/230 (56.96%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR--KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKEN--VQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE---------GFTGF 670
            + +++KAG++ +D + TVS  YA+E+++ +  G  + +++R  +  +  I+NG+D   WNP  D Y+   + A   +  K   K  LQ  + LP D + P++    RL  QK +D+   A+P  ++ +  +Q+ VLG G++  E  +  L   +P +   V  +    AHM+ AGAD +L  SRFEPCGL  L+AMRYGTVP+ +  GGLVDT+A+         G TGF
Sbjct:  197 QFSFLKAGLMWADRITTVSRTYAREILT-DAFGYGMQDVLRARRHDLVAILNGIDNAVWNPSKDAYLSRPFFAGN-LSGKHAAKLQLQTLLRLPKDAHAPLLALGSRLTHQKMADVALQALPQMLEAHPDLQVAVLGCGERRYESAMAALAERHPRRMAAVIGYTERNAHMLHAGADLLLHGSRFEPCGLTPLYAMRYGTVPVASRVGGLVDTIADRGSPEAALRGATGF 424          
BLAST of FC868653 vs. ExPASy Swiss-Prot
Match: GLGA_HYDS0 (Glycogen synthase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=glgA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.332e-32
Identity = 77/213 (36.15%), Postives = 121/213 (56.81%), Query Frame = 2
Query:   20 KINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIR-KTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVAE 655
            ++N++K GI+ SD++ TVS  +A+E+ +  + G  L+ ++R K  + GI+NG+D + WNP TDK +   YD +T    K   K  ++   GL      P+  FI RL +QKG D++  A+   +K     I LG+G    + ++  +            ++N  L+  + AGAD  L+PS +EPCG+ Q+ AMRYG +PIV  TGGL DTV +
Sbjct:  195 QVNFLKGGIVHSDVITTVSKTHAKEIQT--NMGFGLEGVLREKRYVFGILNGIDTESWNPATDKSLYQNYDINTFKAGKEKNKMYVKELFGLETPHTRPLAAFIARLAKQKGLDLIEKAVDDAVKIGYDFIFLGSGDYYYQGKVLDMVKRNMGYVAARIEYNDILSRKLYAGADMFLMPSEYEPCGIGQMIAMRYGAIPIVHKTGGLADTVVD 405          
The following BLAST results are available for this feature:
BLAST of FC868653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 364
Match NameE-valueIdentityDescription
GLGA_PROMS8.013e-3339.71Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_PROM28.013e-3339.71Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_PROVI1.047e-3233.65Glycogen synthase OS=Prosthecochloris vibrioformis... [more]
GLGA_PROM51.047e-3239.23Glycogen synthase OS=Prochlorococcus marinus (stra... [more]
GLGA_PELPB1.785e-3233.03Glycogen synthase OS=Pelodictyon phaeoclathratifor... [more]
GLGA_BORBR1.785e-3237.79Glycogen synthase OS=Bordetella bronchiseptica GN=... [more]
GLGA1_SYNJB1.785e-3239.72Glycogen synthase 1 OS=Synechococcus sp. GN=glgA1 ... [more]
GLGA_THEEB2.332e-3238.21Glycogen synthase OS=Thermosynechococcus elongatus... [more]
GLGA_RALSO2.332e-3235.65Glycogen synthase OS=Ralstonia solanacearum GN=glg... [more]
GLGA_HYDS02.332e-3236.15Glycogen synthase OS=Hydrogenobaculum sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC31003B03EF AbioticL1 Citrus clementina cDNA clone C31003B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868653 ID=FC868653; Name=FC868653; organism=Citrus clementina; type=EST; length=713bp
ATAAACCTGTGAGAGGATCAAAATCAACTGGATGAAAGCTGGAATATTAG
AATCAGACATGGTCTTAACTGTGAGCCCACACTATGCCCAAGAACTTGTT
TCTGGTGAAGACAAAGGAGTAGAATTGGATAACATCATCCGTAAAACTGG
CATTAAGGGAATTGTGAACGGGATGGATGTCCAGGAGTGGAACCCCTTGA
CTGACAAATATATAGGTGTCAAATATGATGCTTCAACTGTGATGGATGCG
AAGCCTCTTCTGAAGGAAGCCCTCCAAGCAGAAGTTGGGTTGCCTGTCGA
TAGAAATATTCCTGTCATAGGCTTCATTGGTAGACTTGAAGAGCAGAAAG
GCTCAGATATTCTTGCAGCTGCCATTCCCCATTTCATCAAAGAGAATGTT
CAGATAATAGTCCTTGGTACTGGCAAAAAACCAATGGAGAAGCAGCTTGA
ACAGTTGGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCA
ATATTCCTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATT
CCAAGCAGATTTGAACCTTGTGGTCTCATTCAATTACATGCCATGCGTTA
TGGAACCGTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGG
CAGAAGGCTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAG
GCTGTGGATCCAG
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